src/hg/makeDb/trackDb/trackDb.ra 1.516

Index: src/hg/makeDb/trackDb/trackDb.ra
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/trackDb.ra,v
retrieving revision 1.515
retrieving revision 1.516
diff -b -B -U 4 -r1.515 -r1.516
--- src/hg/makeDb/trackDb/trackDb.ra	22 Jun 2009 21:50:31 -0000	1.515
+++ src/hg/makeDb/trackDb/trackDb.ra	2 Jul 2009 22:46:55 -0000	1.516
@@ -3022,31 +3022,45 @@
 spectrum on
 type netAlign bosTau1 chainBosTau1
 otherDb bosTau1
 
-track chainEquCab2
-shortLabel $o_Organism Chain
-longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+track horseChainNet
+compositeTrack on
+shortLabel Horse Chain/Net
+longLabel Horse (Sep. 2007/equCab2), Chain and Net alignment tracks
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+visibilityViewDefaults chain=pack net=dense
 group compGeno
+noInherit on
 priority 240
-visibility hide
-color 100,50,0
-altColor 255,240,200
+color 0,0,0
+altColor 255,255,0
+type bed 3
+settingsByView chain:spectrum=on
+sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
-spectrum on
-type chain equCab2
 otherDb equCab2
-
-track netEquCab2
-shortLabel $o_Organism Net
-longLabel $o_Organism ($o_date/$o_db) Alignment Net
-group compGeno
-priority 240.1
-visibility hide
+chainMinScore 3000
+chainLinearGap medium
 spectrum on
-type netAlign equCab2 chainEquCab2
-otherDb equCab2
+html chainNet
+
+    track chainEquCab2
+    subTrack horseChainNet off
+    subGroups view=chain
+    shortLabel $o_Organism Chain
+    longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+    type chain equCab2
+
+    track netEquCab2
+    subTrack horseChainNet off
+    subGroups view=net
+    shortLabel $o_Organism Net
+    longLabel $o_Organism ($o_date/$o_db) Alignment Net
+    type netAlign equCab2 chainEquCab2
 
 track chainCanFam2
 shortLabel $o_Organism Chain
 longLabel $o_Organism ($o_date/$o_db) Chained Alignments
@@ -4443,8 +4457,9 @@
 matrixHeader A, C, G, T
 otherDb hg19
 chainMinScore 3000
 chainLinearGap medium
+html chainNet
 
     track chainHg19
     subTrack humanChainNet off
     subGroups view=chain