hiram: changes by file

review to branch (2009-06-30 to 2009-07-07) v210

• src/hg/makeDb/doc/canFam2.txt
  • 1.20 lines changed: 123, context: html, text, full: html, text
    Rerun all the equCab2 chains and nets to clean up problems
• src/hg/makeDb/doc/equCab2.txt
  • 1.26 lines changed: 141, context: html, text, full: html, text
    Rerun all the equCab2 chains and nets to clean up problems
• src/hg/makeDb/doc/galGal3.txt
  • 1.28 lines changed: 51, context: html, text, full: html, text
    Rerun all the equCab2 chains and nets to clean up problems
• src/hg/makeDb/doc/hg18.txt
  • 1.367 lines changed: 57, context: html, text, full: html, text
    Rerun all the equCab2 chains and nets to clean up problems
• src/hg/makeDb/doc/mm9.txt
  • 1.101 lines changed: 54, context: html, text, full: html, text
    Rerun all the equCab2 chains and nets to clean up problems
• src/hg/makeDb/doc/monDom5.txt
  • 1.11 lines changed: 63, context: html, text, full: html, text
    Rerun all the equCab2 chains and nets to clean up problems
• src/hg/makeDb/doc/ornAna1.txt
  • 1.25 lines changed: 18, context: html, text, full: html, text
    Rerun all the equCab2 chains and nets to clean up problems
• src/hg/makeDb/doc/sacCer2.txt
  • 1.10 lines changed: 27, context: html, text, full: html, text
    Making upstream maf files from the 7-way alignment
• src/hg/makeDb/trackDb/chainNet.html
  • 1.1 lines changed: 155, context: html, text, full: html, text
    Adding Horse chains and nets as a composite
• src/hg/makeDb/trackDb/trackDb.ra
  • 1.517 lines changed: 211, context: html, text, full: html, text
    Composite chain/net tracks for equCab2 release, chicken, platypus, opossum, human, mouse, dog
  • 1.516 lines changed: 39, context: html, text, full: html, text
    Adding Horse chains and nets as a composite
• src/hg/makeDb/trackDb/chicken/priority.ra
  • 1.8 lines changed: 6, context: html, text, full: html, text
    priority for human and horse chainNet composites
• src/hg/makeDb/trackDb/chicken/trackDb.ra
  • 1.11 lines changed: 14, context: html, text, full: html, text
    EquCab2 track moved up to the composite
  • 1.10 lines changed: 4, context: html, text, full: html, text
    priority for human and horse chainNet composites
• src/hg/makeDb/trackDb/dog/priority.ra
  • 1.6 lines changed: 7, context: html, text, full: html, text
    Fixup equCab2 chain net priorities and overrides for hg19 chain net composite
• src/hg/makeDb/trackDb/dog/trackDb.ra
  • 1.22 lines changed: 6, context: html, text, full: html, text
    Fixup equCab2 chain net priorities and overrides for hg19 chain net composite
• src/hg/makeDb/trackDb/mouse/priority.ra
  • 1.11 lines changed: 6, context: html, text, full: html, text
    horse and human chainNet overrides
• src/hg/makeDb/trackDb/mouse/trackDb.ra
  • 1.154 lines changed: 10, context: html, text, full: html, text
    horse and human chainNet overrides
• src/hg/makeDb/trackDb/opossum/trackDb.ra
  • 1.29 lines changed: 10, context: html, text, full: html, text
    overrides for humanChainNet and horseChainNet
• src/hg/makeDb/trackDb/platypus/priority.ra
  • 1.2 lines changed: 7, context: html, text, full: html, text
    No longer need the priority here, it is in the trackDb.ra now
• src/hg/makeDb/trackDb/platypus/trackDb.ra
  • 1.3 lines changed: 6, context: html, text, full: html, text
    Overrides for humanChainNet and horseChainNet
• src/index/bptForTwoBit/makefile
  • 1.3 lines changed: 1, context: html, text, full: html, text
    Needs SOCKETLIB for build on solaris
• src/index/bptLookupStringToBits64/makefile
  • 1.3 lines changed: 1, context: html, text, full: html, text
    Needs SOCKETLIB for build on Solaris
• src/index/bptMakeStringToBits64/makefile
  • 1.3 lines changed: 1, context: html, text, full: html, text
    Needs SOCKETLIB for build on Solaris
• src/utils/makefile
  • 1.72 lines changed: 1, context: html, text, full: html, text
    dding bigWigInfo to the build, and need SOCKETLIB for building on Solaris
• src/utils/bedToBigBed/makefile
  • 1.5 lines changed: 14, context: html, text, full: html, text
    dding bigWigInfo to the build, and need SOCKETLIB for building on Solaris
• src/utils/bigBedSummary/makefile
  • 1.5 lines changed: 1, context: html, text, full: html, text
    dding bigWigInfo to the build, and need SOCKETLIB for building on Solaris
• src/utils/bigBedToBed/makefile
  • 1.5 lines changed: 1, context: html, text, full: html, text
    adding bigWigInfo to the build, and need SOCKETLIB for building on Solaris
• src/utils/bigWigSummary/makefile
  • 1.5 lines changed: 1, context: html, text, full: html, text
    adding bigWigInfo to the build, and need SOCKETLIB for building on Solaris
• src/utils/bigWigToBedGraph/makefile
  • 1.5 lines changed: 1, context: html, text, full: html, text
    adding bigWigInfo to the build, and need SOCKETLIB for building on Solaris
• src/utils/faToTwoBit/makefile
  • 1.14 lines changed: 1, context: html, text, full: html, text
    adding bigWigInfo to the build, and need SOCKETLIB for building on Solaris
• src/utils/findMotif/findMotif.c
  • 1.13 lines changed: 6, context: html, text, full: html, text
    Fixing a gap confusion bug
• src/utils/findMotif/makefile
  • 1.8 lines changed: 1, context: html, text, full: html, text
    adding bigWigInfo to the build, and need SOCKETLIB for building on Solaris
• src/utils/pslToPslx/makefile
  • 1.3 lines changed: 1, context: html, text, full: html, text
    adding bigWigInfo to the build, and need SOCKETLIB for building on Solaris
• src/utils/twoBitInfo/makefile
  • 1.9 lines changed: 1, context: html, text, full: html, text
    adding bigWigInfo to the build, and need SOCKETLIB for building on Solaris
• src/utils/twoBitToFa/makefile
  • 1.14 lines changed: 1, context: html, text, full: html, text
    adding bigWigInfo to the build, and need SOCKETLIB for building on Solaris
• src/utils/udcCleanup/makefile
  • 1.3 lines changed: 1, context: html, text, full: html, text
    adding bigWigInfo to the build, and need SOCKETLIB for building on Solaris
• src/utils/wigToBigWig/makefile
  • 1.6 lines changed: 1, context: html, text, full: html, text
    adding bigWigInfo to the build, and need SOCKETLIB for building on Solaris
• src/weblet/bottleneck/makefile
  • 1.8 lines changed: 1, context: html, text, full: html, text
    Needs SOCKETLIB for build on solaris