src/utils/qa/igtc.csh 1.23

Index: src/utils/qa/igtc.csh
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/qa/igtc.csh,v
retrieving revision 1.22
retrieving revision 1.23
diff -b -B -U 4 -r1.22 -r1.23
--- src/utils/qa/igtc.csh	19 May 2009 18:51:34 -0000	1.22
+++ src/utils/qa/igtc.csh	1 Jul 2009 20:38:08 -0000	1.23
@@ -306,9 +306,9 @@
 
 foreach i ( $counter )
   set extFileId[$i]=`hgsql -Ne "SELECT id FROM extFile WHERE name \
     LIKE 'genetrap.$update.fasta'" $mice[$i]`
-  echo "$mice[$i].extFileId = $extFileId[$i]"
+  echo "$mice[$i].extFile.id = $extFileId[$i]"
 end
 
 # compare counts with file counts
 echo "\n\n----------------------"
@@ -345,9 +345,9 @@
 # get the new rows from tables on dev
 echo "\n\n----------------------"
 echo "Creating files with the new rows from the extFile and seq tables \
   on dev"
-echo "(these rows will need to be moved to the approriate table on beta)\n"
+echo "(these rows will need to be moved to the appropriate table on beta)\n"
 
 foreach i ( $counter )
   hgsql -Ne "SELECT * FROM seq WHERE extFile = '$extFileId[$i]'" $mice[$i] \
     > $mice[$i].seq.$update
@@ -497,9 +497,9 @@
 wc -l *devOnly | grep -v total
 echo
 echo "beta"
 foreach i ( $counter )
-  hgsql -h '$sqlbeta' -Ne 'SELECT COUNT(*) FROM seq \
+  hgsql -h $sqlbeta -Ne 'SELECT COUNT(*) FROM seq \
     WHERE extFile = "'$extFileIdOld[$i]'"' $mice[$i]
 end
 wc -l *betaOnly | grep -v total