src/hg/encode/DAFs/GisRnaSeq.daf 1.4

Index: src/hg/encode/DAFs/GisRnaSeq.daf
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/encode/DAFs/GisRnaSeq.daf,v
retrieving revision 1.3
retrieving revision 1.4
diff -b -B -U 1000000 -r1.3 -r1.4
--- src/hg/encode/DAFs/GisRnaSeq.daf	23 Feb 2009 18:10:04 -0000	1.3
+++ src/hg/encode/DAFs/GisRnaSeq.daf	26 Jun 2009 19:46:53 -0000	1.4
@@ -1,48 +1,62 @@
 # Data Agreement File for RNA-seq project $Revision$
 
 # This file specifies the data agreement between your lab and 
 # the DCC.  It should not be changed unilaterally.
 
 # Lab and general info
 grant             Gingeras
 lab               Gis
 dataType          RnaSeq
 variables         cell, localization, rnaExtract
 assembly          hg18
 dafVersion        0.2.2
 
 # Track/view definition
 view             Transfrags
 longLabelPrefix  GIS RNA-Seq Transfrags
 type             broadPeak
 hasReplicates    no
 required         no
 
 view             PlusRawSignal
 longLabelPrefix  GIS RNA-Seq Plus Strand Raw Signal
 type             wig
 hasReplicates    no
 required         no
 
 view             MinusRawSignal
 longLabelPrefix  GIS RNA-Seq Minus Strand Raw Signal
 type             wig
 hasReplicates    no
 required         no
 
+# Alignments of reads which are not split on the genome
 view             Alignments
 longLabelPrefix  GIS RNA-Seq Tags
 type             tagAlign
 hasReplicates    no
-required         yes
+required         no
 
+# Alignments of reads which are split on the genome (eg, spliced)
+view             SplitAlign
+longLabelPrefix  GIS RNA-Seq Split Tags
+type             pairedTagAlign
+hasReplicates    no
+required         no
+
+# Raw data for SOLID
 view             RawData
 type             csfasta
 hasReplicates    no
-required         yes
+required         no
 
 view             RawData2
 type             csqual
 hasReplicates    no
-required         yes
+required         no
 
+# Raw data for Solexa
+view             RawData3
+type             fastq
+hasReplicates    no
+required         no