src/hg/hgTracks/makefile 1.84
1.84 2009/06/24 20:33:04 angie
Adding rudimentary support for BAM (compressed alignments) files as a native track type.
Index: src/hg/hgTracks/makefile
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/hgTracks/makefile,v
retrieving revision 1.83
retrieving revision 1.84
diff -b -B -U 1000000 -r1.83 -r1.84
--- src/hg/hgTracks/makefile 10 Mar 2009 00:33:59 -0000 1.83
+++ src/hg/hgTracks/makefile 24 Jun 2009 20:33:04 -0000 1.84
@@ -1,51 +1,54 @@
include ../../inc/common.mk
L += ${MYSQLLIBS} -lm
MYLIBDIR = ../../lib/${MACHTYPE}
MYLIBS = ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a
+ifeq (${USE_BAM},1)
+ MYLIBS += ${SAMPATH}/libbam.a
+endif
A = hgTracks
-O = $A.o altGraphXTrack.o bedGraph.o bedTrack.o bigWigTrack.o chainTrack.o \
+O = $A.o altGraphXTrack.o bamTrack.o bedGraph.o bedTrack.o bigWigTrack.o chainTrack.o \
cgapSageTrack.o chromGraphTrack.o config.o contigTrack.o \
coverageTrack.o cytoBandTrack.o cutterTrack.o \
expRatioTracks.o factorSource.o goldTrack.o loweLabTracks.o \
mafTrack.o netTrack.o pslTrack.o rmskTrack.o \
sampleTracks.o simpleTracks.o switchGear.o transMapTracks.o \
wabaTrack.o wigTrack.o cds.o \
wigMafTrack.o encode.o variation.o transcriptome.o\
rnaFoldTrack.o retroGene.o hapmapTrack.o rnaPLFoldTrack.o\
wiki.o wikiTrack.o
include ../../inc/cgi_build_rules.mk
ifeq (${GBROWSE}, 1)
GBROWSE_D=-DGBROWSE
A = gbrowseTest
O = $A.o oneTrack.o \
bedGraph.o cds.o chainTrack.o mafTrack.o netTrack.o pslTrack.o \
simpleTracks.o wigMafTrack.o wigTrack.o
else
GBROWSE_D=
endif
%.o: %.c
${CC} ${COPT} ${CFLAGS} ${GBROWSE_D} ${HG_DEFS} ${HG_WARN} ${HG_INC} ${XINC} -o $@ -c $<
mgsc: strip
mv $A ${CGI_BIN}/$A
compile: $O
${CC} -o $A $O ${MYLIBS} ${L}
wigTrack.o: wigCommon.h
bedGraph.o: wigCommon.h
switchGear.o: switchGear.h
cds.o: cds.h
hgTracks.o: cds.h
pslTrack.o: cds.h
clean::
rm -f ct_hgwdev_*.bed hgtIdeo_*.gif hgt_*.gif