mikep: changes by file

branch to review (2009-06-23 to 2009-06-30) v209

• src/makefile
  • 1.61 lines changed: 1, context: html, text, full: html, text
    adding hg libs for user apps
• src/hg/encode/DAFs/CshlRnaSeq.daf
  • 1.4 lines changed: 8, context: html, text, full: html, text
    temporary new version until we get CSHL working with bigBed tagAlign
• src/hg/encode/DAFs/GisRnaSeq.daf
  • 1.4 lines changed: 17, context: html, text, full: html, text
    added split tags, and raw data for Solexa
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.384 lines changed: 234, context: html, text, full: html, text
    loading CSHL bigbed tagAligns
  • 1.380 lines changed: 1, context: html, text, full: html, text
    tweak to UI
  • 1.375 lines changed: 13, context: html, text, full: html, text
    GIS RnaSeq base coloring
• src/hg/makeDb/trackDb/human/hg18/wgEncodeGisDnaPet.html
  • 1.4 lines changed: 9, context: html, text, full: html, text
    added data-release policy dna-pet doco
  • 1.3 lines changed: 78, context: html, text, full: html, text
    updated version of dna-pet doco
• src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.html
  • 1.6 lines changed: 74, context: html, text, full: html, text
    new clone-free method for GIS RNA-PET
• src/hg/makeDb/trackDb/human/hg18/wgEncodeGisRnaSeq.html
  • 1.2 lines changed: 7, context: html, text, full: html, text
    format tweak
  • 1.1 lines changed: 102, context: html, text, full: html, text
    Track documentation for GIS RNA-seq
• src/utils/qa/weeklybld/doHgDownloadUtils.csh
  • 1.5 lines changed: 16, context: html, text, full: html, text
    new process for copying userApps binaries (not just liftOver now)
• src/utils/qa/weeklybld/makeLiftOver.csh
  • 1.2 lines changed: 141, context: html, text, full: html, text
    liftover is part of larger suite of user apps now
• src/utils/qa/weeklybld/makeUserApps.csh
  • 1.2 lines changed: 20, context: html, text, full: html, text
    new process for copying userApps binaries (not just liftOver now)
  • 1.1 lines changed: 47, context: html, text, full: html, text
    liftover is part of larger suite of user apps now