galt: changes by file

review to branch (2009-07-15 to 2009-07-21) v211

• src/hg/encode/hgEncodeSubmit/go.sample
  • 1.5 lines changed: 1, context: html, text, full: html, text
    adding ./ for users without . on path
• src/hg/encode/hgEncodeSubmit/pipeline_runner.rb
  • 1.3 lines changed: 215, context: html, text, full: html, text
    New improved background runner with greater concurrency, throttles on validation and loading, nice-ing of process priorities, fork/exec/zombie-handling, some logging for high server load or high number of processes, some admin functions to display or reset the running-lists
• src/hg/encode/hgEncodeSubmit/runforever.sample
  • 1.3 lines changed: 1, context: html, text, full: html, text
    typo fix pine to pipe
• src/hg/encode/hgEncodeSubmit/app/controllers/pipeline_controller.rb
  • 1.91 lines changed: 5, context: html, text, full: html, text
    resurrecting the progress bar for uploads
  • 1.90 lines changed: 21, context: html, text, full: html, text
    New improved background runner with greater concurrency, throttles on validation and loading, nice-ing of process priorities, fork/exec/zombie-handling, some logging for high server load or high number of processes, some admin functions to display or reset the running-lists
• src/hg/encode/hgEncodeSubmit/lib/pipeline_background.rb
  • 1.16 lines changed: 2, context: html, text, full: html, text
    resurrecting the progress bar for uploads
  • 1.15 lines changed: 31, context: html, text, full: html, text
    New improved background runner with greater concurrency, throttles on validation and loading, nice-ing of process priorities, fork/exec/zombie-handling, some logging for high server load or high number of processes, some admin functions to display or reset the running-lists
• src/utils/cvsTools/cvscheck
  • 1.1 lines changed: 2, context: html, text, full: html, text
    cvscheck checks for sandbox changes without updating the sandbox
• src/utils/cvsTools/cvsup
  • 1.5 lines changed: 2, context: html, text, full: html, text
    cvscheck checks for sandbox changes without updating the sandbox
  • 1.4 lines changed: 9, context: html, text, full: html, text
    burned once, trying a helping hack
• src/utils/cvsTools/makefile
  • 1.4 lines changed: 1, context: html, text, full: html, text
    cvscheck checks for sandbox changes without updating the sandbox
• src/utils/qa/weeklybld/coBranch.csh
  • 1.6 lines changed: 6, context: html, text, full: html, text
    handle sandbox configuration
• src/utils/qa/weeklybld/configureSandbox.csh
  • 1.1 lines changed: 48, context: html, text, full: html, text
    make util to help configure a sandbox with settings like SSL,BAM
• src/utils/qa/weeklybld/defaultBuildSettings.mk
  • 1.1 lines changed: 2, context: html, text, full: html, text
    add settings profiles for SSL and BAM
• src/utils/qa/weeklybld/downloadBuildSettings.mk
  • 1.1 lines changed: 2, context: html, text, full: html, text
    add settings profiles for SSL and BAM
• src/utils/qa/weeklybld/makeUserApps.csh
  • 1.3 lines changed: 4, context: html, text, full: html, text
    handle sandbox configuration