src/utils/qa/chain2.csh 1.11

Index: src/utils/qa/chain2.csh
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/qa/chain2.csh,v
retrieving revision 1.10
retrieving revision 1.11
diff -b -B -U 4 -r1.10 -r1.11
--- src/utils/qa/chain2.csh	21 May 2009 01:28:08 -0000	1.10
+++ src/utils/qa/chain2.csh	9 Jul 2009 21:17:28 -0000	1.11
@@ -63,8 +63,23 @@
 echo
 
 runBits.csh $db $track
 
+# -------------------------------------------------
+# check sort
+# note:  chain*Link tables do not need to be sorted if they have an index
+
+echo
+echo "*~*~*~*~*~*~*~*~*~*~*~*~*~*"
+echo "check sort:"
+
+positionalTblCheck -verbose=0 $db chain$Org
+if ( ! $status ) then
+  echo "sort is ok"
+endif
+echo
+
+exit
 
 # -------------------------------------------------
 # check ends for off-end coords: