src/hg/lib/snp125Coding.sql 1.1

Index: src/hg/lib/snp125Coding.sql
===================================================================
RCS file: src/hg/lib/snp125Coding.sql
diff -N src/hg/lib/snp125Coding.sql
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ src/hg/lib/snp125Coding.sql	8 Jul 2009 04:06:32 -0000	1.1
@@ -0,0 +1,23 @@
+# snp125Coding.sql was originally generated by the autoSql program, which also 
+# generated snp125Coding.c and snp125Coding.h.  This creates the database representation of
+# an object which can be loaded and saved from RAM in a fairly 
+# automatic way.
+
+#Annotations of the effects of SNPs on translated protein sequence.
+CREATE TABLE snp125Coding (
+    bin smallint not null,      # Bin number for browser speedup
+    chrom varchar(255) not null,	# Reference sequence chromosome or scaffold
+    chromStart int unsigned not null,	# Start position in chromosome
+    chromEnd int unsigned not null,	# End position in chromosome
+    name varchar(255) not null,	# Reference SNP identifier
+    transcript varchar(255) not null,	# Accession of the transcript modified by SNP
+    frame enum("1", "2", "3")  not null,	# Frame of transcript's codon modified by SNP
+    alleleCount int not null,	# Number of annotated alleles for SNP
+    funcCodes longblob not null,	# dbSNP function codes (e.g. 42=missense)
+    alleles longblob not null,	# Observed nucleotide alleles corresponding to funcCodes
+    codons longblob not null,	# Codons corresponding to funcCodes
+    peptides longblob not null,	# Amino acid sequence corresponding to funcCodes
+              #Indices
+    INDEX(chrom(8),bin),
+    INDEX(name(20))
+);