src/hg/hgc/hgc.c 1.1559
1.1559 2009/07/10 22:17:04 angie
In printSnpAlleleRows, don't reverse-complement refUCSC if it is like '(1000bp insertion)'.
Index: src/hg/hgc/hgc.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/hgc/hgc.c,v
retrieving revision 1.1558
retrieving revision 1.1559
diff -b -B -U 4 -r1.1558 -r1.1559
--- src/hg/hgc/hgc.c 26 Jun 2009 22:18:57 -0000 1.1558
+++ src/hg/hgc/hgc.c 10 Jul 2009 22:17:04 -0000 1.1559
@@ -14362,9 +14362,10 @@
void printSnpAlleleRows(struct snp125 *snp, int version)
/* Print the UCSC ref allele (and dbSNP if it differs), as row(s) of a
* 6-column table. */
{
-if (sameString(snp->strand,"+"))
+if (sameString(snp->strand,"+") ||
+ strchr(snp->refUCSC, '(')) // don't try to revComp refUCSC if it is "(N bp insertion)" etc.
{
printf("<TR><TD><B>Reference allele: </B></TD>"
"<TD align=center>%s</TD>"FOURBLANKCELLS"</TR>\n", snp->refUCSC);
if (!sameString(snp->refUCSC, snp->refNCBI))