src/hg/lib/snp125Coding.as 1.1

Index: src/hg/lib/snp125Coding.as
===================================================================
RCS file: src/hg/lib/snp125Coding.as
diff -N src/hg/lib/snp125Coding.as
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ src/hg/lib/snp125Coding.as	8 Jul 2009 04:06:32 -0000	1.1
@@ -0,0 +1,15 @@
+table snp125Coding
+"Annotations of the effects of SNPs on translated protein sequence."
+    (
+    string      chrom;        "Reference sequence chromosome or scaffold"
+    uint        chromStart;   "Start position in chromosome"
+    uint        chromEnd;     "End position in chromosome"
+    string      name;         "Reference SNP identifier"
+    string      transcript;   "Accession of the transcript modified by SNP"
+    enum(1,2,3) frame;        "Frame of transcript's codon modified by SNP"
+    int         alleleCount;  "Number of annotated alleles for SNP"
+    ushort[alleleCount]  funcCodes; "dbSNP function codes (e.g. 42=missense)"
+    string[alleleCount]  alleles;   "Observed nucleotide alleles corresponding to funcCodes"
+    lstring[alleleCount] codons;    "Codons corresponding to funcCodes"
+    lstring[alleleCount] peptides;  "Amino acid sequence corresponding to funcCodes"
+    )