src/hg/archaeStuff/data/Genome-info-mods 1.72
1.72 2009/07/30 02:35:16 pchan
add methVulc0, methInfe0, methFerv0
Index: src/hg/archaeStuff/data/Genome-info-mods
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/archaeStuff/data/Genome-info-mods,v
retrieving revision 1.71
retrieving revision 1.72
diff -b -B -U 4 -r1.71 -r1.72
--- src/hg/archaeStuff/data/Genome-info-mods 28 Jul 2009 20:54:53 -0000 1.71
+++ src/hg/archaeStuff/data/Genome-info-mods 30 Jul 2009 02:35:16 -0000 1.72
@@ -160,10 +160,10 @@
Name_chg: chr lg_extrachr sm_extrachr
TIGR_ID: 57
Rel_date: August 1996
Sp_info: The organism's genus was formerly <I>Methanococcus</I>, but it has been reclassified as <I>Methanocaldococcus</I>. <I>M. jannaschii</I> is a methanogen which grows optimally at 85C, and has the distinction of being the first archaeon and first hyperthermophile sequenced.
-Multiz: Methanococcus metMar1 methMari_C5_1 methMari_C7 methVann1 methAeol1 methTher1 methKand1
-Phylo: (methKand1,(methTher1,(methJann1,(methAeol1,(methVann1,(methMari_C7,(metMar1,methMari_C5_1)))))))
+Multiz: Methanococcus methFerv0 methVulc0 methInfe0 metMar1 methMari_C5_1 methMari_C7 methVann1 methAeol1 methTher1 methKand1
+Phylo: (methKand1,(methTher1,(((methJann1,methFerv0),methVulc0),methInfe0)),(methAeol1,(methVann1,(methMari_C7,(metMar1,methMari_C5_1)))))
Org_abr: Meth_mari_S2
Menu_name: Methanococcus maripaludis S2
DB_name: metMar1
@@ -207,8 +207,55 @@
SP_ID: METVA METMP
Multiz: Methanococcus metMar1 methMari_C5_1 methMari_C6 methMari_C7 methAeol1 methJann1
Phylo: (methTher1,(methJann1,(methAeol1,(methVann1,(methMari_C7,(methMari_C6,(metMar1,methMari_C5_1)))))))
+Org_abr: Meth_ferv_AG86
+Menu_name: Methanocaldococcus fervens
+DB_name: methFerv0
+Iso_pub: 10319479
+Tax_name: Methanocaldococcus fervens AG86
+SP_ID: METJA
+Rel_date: July 2009
+Name_chg: ctg00024 ctg00058 ctg00051 ctg00061 ctg00035 ctg00020 ctg00057 ctg00015 ctg00029 ctg00040 ctg00028 ctg00065 ctg00060 ctg00030 ctg00026 ctg00022 ctg00045 ctg00032 ctg00031 ctg00017 ctg00016 ctg00008 ctg00013 ctg00014 ctg00021 ctg00033 ctg00036 ctg00025 ctg00034 ctg00003 ctg00023 ctg00018 ctg00027 ctg00019
+Seq_src: Joint Genome Institute
+Multiz: Methanococcus methJann1 methVulc0 methInfe0 metMar1 methMari_C5_1 methMari_C7 methVann1 methAeol1 methTher1 methKand1
+Phylo: (methKand1,(methTher1,(((methJann1,methFerv0),methVulc0),methInfe0)),(methAeol1,(methVann1,(methMari_C7,(metMar1,methMari_C5_1)))))
+
+Org_abr: Meth_infe_ME
+Menu_name: Methanocaldococcus infernus
+DB_name: methInfe0
+Iso_pub: 9734046
+Tax_name: Methanocaldococcus infernus ME
+SP_ID: METJA
+Rel_date: July 2009
+Name_chg: ctg00065 ctg00004 ctg00020 ctg00072 ctg00034 ctg00022 ctg00031 ctg00044 ctg00045 ctg00063 ctg00039 ctg00103 ctg00043 ctg00019 ctg00040 ctg00051 ctg00026 ctg00037 ctg00018 ctg00010 ctg00085 ctg00032 ctg00028 ctg00021 ctg00049 ctg00052 ctg00042 ctg00095 ctg00038 ctg00033 ctg00081 ctg00070 ctg00113 ctg00016 ctg00002 ctg00069 ctg00024 ctg00027 ctg00108 ctg00017 ctg00107 ctg00062 ctg00036 ctg00029 ctg00035 ctg00041 ctg00023 ctg00009 ctg00047 ctg00082 ctg00025 ctg00046 ctg00030 ctg00059
+Seq_src: Joint Genome Institute
+Multiz: Methanococcus methJann1 methFerv0 methVulc0 metMar1 methMari_C5_1 methMari_C7 methVann1 methAeol1 methTher1 methKand1
+Phylo: (methKand1,(methTher1,(((methJann1,methFerv0),methVulc0),methInfe0)),(methAeol1,(methVann1,(methMari_C7,(metMar1,methMari_C5_1)))))
+
+Org_abr: Meth_vulc_M7
+Org_name: Methanocaldococcus vulcanius M7
+Menu_name: Methanocaldococcus vulcanius
+Domain: Archaea
+DB_name: methVulc0
+Iso_pub: 10319479
+Rel_date: July 2009
+DB_src: ORNL
+Tax_name: Methanocaldococcus vulcanius M7
+BLAT_IDs: 61019 61020
+Tax_ID: 579137: Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus.
+TIGR_ID: 0
+SP_ID: METJA
+Dom_ct: &Meth_infe_ME
+Gen_ID: 0
+Seq_acc: Meth-vulcM7-draft0609 Contig4 Contig6 Contig7 Contig2 Contig3 Contig5
+Name_chg: Contig4 Contig6 Contig7 Contig2 Contig3 Contig5
+Seq_size: 729534 713986 110152 104703 44189 38809
+Seq_GC: 31.48 31.26 31.57 32.04 30.53 31.97
+Seq_src: Joint Genome Institute
+Multiz: Methanococcus methJann1 methFerv0 methInfe0 metMar1 methMari_C5_1 methMari_C7 methVann1 methAeol1 methTher1 methKand1
+Phylo: (methKand1,(methTher1,(((methJann1,methFerv0),methVulc0),methInfe0)),(methAeol1,(methVann1,(methMari_C7,(metMar1,methMari_C5_1)))))
+
Org_abr: Meth_acet
DB_name: metAce1
Rel_date: April 2002
Iso_pub: 16346552
@@ -814,18 +861,19 @@
Tax_name: Natrialba magadii ATCC 43099
BLAT_IDs: 61008 61009
Tax_ID: 547559: Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natrialba.
TIGR_ID: 0
+SP_ID: HALSA HALSP NATPD HALMA HALWD HALVO HALSQ
Dom_ct: &Meth_hung_JF-1
Gen_ID: 0
-Seq_acc: Nmag-assembly-04-2009 Contig73 Contig74 Contig75
+Seq_acc: Nmag-assembly-04-2009 Contig75 Contig74 Contig73
Name_chg: Contig73 Contig74 Contig75
-Seq_size: 58508 254969 4128710
-Seq_GC: 61.91 56.82 61.3
-#Seq_acc: Nmag-assembly-04-2009 Contig73 Contig74 Contig75 Contig1 Contig2 Contig3 Contig4 Contig5 Contig6 Contig7 Contig8 Contig9 Contig10 Contig11 Contig12 Contig13 Contig14 Contig15 Contig16 Contig17 Contig18 Contig19 Contig20 Contig21 Contig22 Contig23 Contig24 Contig25 Contig26 Contig27 Contig28 Contig29 Contig30 Contig31 Contig32 Contig33 Contig34 Contig35 Contig36 Contig37 Contig38 Contig39 Contig40 Contig41 Contig42 Contig43 Contig44 Contig45 Contig46 Contig47 Contig48 Contig49 Contig50 Contig51 Contig52 Contig53 Contig54 Contig55 Contig56 Contig57 Contig58 Contig59 Contig60 Contig61 Contig62 Contig63 Contig64 Contig65 Contig66 Contig67 Contig68 Contig69 Contig70 Contig71 Contig72
+Seq_size: 4128710 254969 58508
+Seq_GC: 61.30 56.82 61.91
+#Seq_acc: Nmag-assembly-04-2009 Contig75 Contig74 Contig73 Contig1 Contig2 Contig3 Contig4 Contig5 Contig6 Contig7 Contig8 Contig9 Contig10 Contig11 Contig12 Contig13 Contig14 Contig15 Contig16 Contig17 Contig18 Contig19 Contig20 Contig21 Contig22 Contig23 Contig24 Contig25 Contig26 Contig27 Contig28 Contig29 Contig30 Contig31 Contig32 Contig33 Contig34 Contig35 Contig36 Contig37 Contig38 Contig39 Contig40 Contig41 Contig42 Contig43 Contig44 Contig45 Contig46 Contig47 Contig48 Contig49 Contig50 Contig51 Contig52 Contig53 Contig54 Contig55 Contig56 Contig57 Contig58 Contig59 Contig60 Contig61 Contig62 Contig63 Contig64 Contig65 Contig66 Contig67 Contig68 Contig69 Contig70 Contig71 Contig72
#Name_chg: Contig73 Contig74 Contig75 Contig1 Contig2 Contig3 Contig4 Contig5 Contig6 Contig7 Contig8 Contig9 Contig10 Contig11 Contig12 Contig13 Contig14 Contig15 Contig16 Contig17 Contig18 Contig19 Contig20 Contig21 Contig22 Contig23 Contig24 Contig25 Contig26 Contig27 Contig28 Contig29 Contig30 Contig31 Contig32 Contig33 Contig34 Contig35 Contig36 Contig37 Contig38 Contig39 Contig40 Contig41 Contig42 Contig43 Contig44 Contig45 Contig46 Contig47 Contig48 Contig49 Contig50 Contig51 Contig52 Contig53 Contig54 Contig55 Contig56 Contig57 Contig58 Contig59 Contig60 Contig61 Contig62 Contig63 Contig64 Contig65 Contig66 Contig67 Contig68 Contig69 Contig70 Contig71 Contig72
-#Seq_size: 58508 254969 4128710 983 869 1014 924 921 989 977 924 952 927 1398 1347 1265 935 1002 932 985 929 880 976 924 914 958 942 620 1013 865 961 554 997 938 900 905 947 976 611 766 965 759 969 924 920 985 865 951 938 925 960 893 922 854 997 935 1072 708 1288 1548 1514 1712 1239 1715 1400 1777 1675 1644 1935 1467 1992 2000 1381 1075 2013
-#Seq_GC: 61.91 56.82 61.3 61.44 60.53 64.2 61.58 58.52 41.35 62.74 61.47 63.13 60.73 61.3 58.28 63.64 59.68 57.58 53.97 65.58 61.79 58.18 56.45 61.26 62.47 58.98 60.51 55.48 54.89 62.89 55.98 65.52 59.68 61.3 64.11 60.55 67.05 48.77 68.41 65.4 56.48 60.34 57.79 59.96 54.24 60.51 59.88 62.04 61.62 64.22 60.73 63.38 56.4 54.68 61.08 62.99 63.15 61.44 62.66 61.5 64.66 73.89 61.99 59.48 59.21 61.11 62.69 61.74 61.65 64.21 61.14 54.75 60.32 63.07 63.54
+#Seq_size: 4128710 254969 58508 983 869 1014 924 921 989 977 924 952 927 1398 1347 1265 935 1002 932 985 929 880 976 924 914 958 942 620 1013 865 961 554 997 938 900 905 947 976 611 766 965 759 969 924 920 985 865 951 938 925 960 893 922 854 997 935 1072 708 1288 1548 1514 1712 1239 1715 1400 1777 1675 1644 1935 1467 1992 2000 1381 1075 2013
+#Seq_GC: 61.30 56.82 61.91 61.44 60.53 64.2 61.58 58.52 41.35 62.74 61.47 63.13 60.73 61.3 58.28 63.64 59.68 57.58 53.97 65.58 61.79 58.18 56.45 61.26 62.47 58.98 60.51 55.48 54.89 62.89 55.98 65.52 59.68 61.3 64.11 60.55 67.05 48.77 68.41 65.4 56.48 60.34 57.79 59.96 54.24 60.51 59.88 62.04 61.62 64.22 60.73 63.38 56.4 54.68 61.08 62.99 63.15 61.44 62.66 61.5 64.66 73.89 61.99 59.48 59.21 61.11 62.69 61.74 61.65 64.21 61.14 54.75 60.32 63.07 63.54
Gene_ct: 0
Pub_id:
Rel_date: Private
Seq_src: Joint Genome Institute