src/hg/makeDb/doc/ce6.txt 1.17

1.17 2009/07/28 21:55:25 hiram
5-way alignments done on ce7 and ce8, liftOvers done for ce6 to ce7 and ce7 to ce8

Index: src/hg/makeDb/doc/ce6.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/ce6.txt,v
retrieving revision 1.16
retrieving revision 1.17
diff -b -B -U 4 -r1.16 -r1.17
--- src/hg/makeDb/doc/ce6.txt	17 Oct 2008 01:06:31 -0000	1.16
+++ src/hg/makeDb/doc/ce6.txt	28 Jul 2009 21:55:25 -0000	1.17
@@ -2729,4 +2729,18 @@
 # AUTOMATE UPSTREAM FILE CREATION (2008-10-15 markd)
 update genbank.conf:
 ce6.upstreamGeneTbl = refGene
 ce6.upstreamMaf = multiz6way /hive/data/genomes/ce6/bed/multiz6way/species.lst
+
+############################################################################
+# CE6->CE7 LIFTOVER (DONE - 2008-06-24 - Hiram)
+    cd /hive/data/genomes/ce6
+    #	test procedure with -debug first
+    doSameSpeciesLiftOver.pl -bigClusterHub=swarm -workhorse=hgwdev \
+	-ooc /hive/data/genomes/ce6/jkStuff/11.ooc ce6 ce7 -debug
+    cd bed/blat.ce7.2009-07-28
+    time nice -n +19 doSameSpeciesLiftOver.pl -bigClusterHub=swarm \
+	-workhorse=hgwdev \
+	-ooc /hive/data/genomes/ce6/jkStuff/11.ooc ce6 ce7 > do.log 2>&1 &
+    #	real    8m7.833s
+
+#########################################################################