src/hg/makeDb/doc/hg18.txt 1.373

1.373 2009/07/29 00:47:06 aamp
Fix to previous two Agilent Arrays track load. Faked two extra columns to make it bed 6.

Index: src/hg/makeDb/doc/hg18.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/hg18.txt,v
retrieving revision 1.372
retrieving revision 1.373
diff -b -B -U 4 -r1.372 -r1.373
--- src/hg/makeDb/doc/hg18.txt	28 Jul 2009 23:38:02 -0000	1.372
+++ src/hg/makeDb/doc/hg18.txt	29 Jul 2009 00:47:06 -0000	1.373
@@ -21351,12 +21351,13 @@
     cd /hive/data/hg18/bed/agilentProbes
     wget --timestamping --user=microarray --password=<get-it-from-agilent> \
         "ftp://ftp.agilent.com/restricted/UCSC_BED_FILES/*"
     tail -n +3 022837_D_UCSCTrack_20090331.txt | hgLoadBed hg18 agilentCnv2x105k stdin
-    tail -n +3 023642_D_BED_20090528.bed | hgLoadBed hg18 agilentHdd1x1m stdin
+    tail -n +3 023642_D_BED_20090528.bed | \
+      awk 'BEGIN{FS="\t";OFS="\t"}{print $0, "1000", "+";}' | \
+      hgLoadBed hg18 agilentHdd1x1m stdin
 
 ############################################################################
-############################################################################
 # TRANSMAP vertebrate.2008-05-20 build  (2008-05-24 markd)
 
 vertebrate-wide transMap alignments were built  Tracks are created and loaded
 by a single Makefile. This is available from: