src/hg/makeDb/doc/hg18.txt 1.374

Index: src/hg/makeDb/doc/hg18.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/hg18.txt,v
retrieving revision 1.373
retrieving revision 1.374
diff -b -B -U 4 -r1.373 -r1.374
--- src/hg/makeDb/doc/hg18.txt	29 Jul 2009 00:47:06 -0000	1.373
+++ src/hg/makeDb/doc/hg18.txt	29 Jul 2009 04:24:25 -0000	1.374
@@ -28564,4 +28564,22 @@
    svn+ssh://hgwdev.cse.ucsc.edu/projects/compbio/usr/markd/svn/projs/transMap/tags/vertebrate.2009-07-01
 
 see doc/builds.txt for specific details.
 ############################################################################
+# rnaBinding RNA Binding Proteins (2009-07-28 markd)
+# contributor: Jeremy Sanford <sanford@biology.ucsc.edu>
+
+    # sfrs1Input BED table: 
+    #   need to drop color, as it's in the wrong column
+    #   skip header
+    tawk 'NR>1{print $1,$2,$3,$4,$5,$6}' Input_sequence_blocks.bed | hgLoadBed hg18 sfrs1Input stdin
+
+    # sfrs1Clip BED table:
+    #   skip header
+    tawk 'NR>1{print $1,$2,$3,$4,$5,$6}' SFRS1_CLIP_sequence_blocks.bed | hgLoadBed hg18 sfrs1Clip stdin
+
+    # SFRS1_consensus_sites.wig
+    tawk 'NR>1' SFRS1_consensus_sites.wig  | wigEncode stdin sfrs1ConsensusSites.wig  sfrs1ConsensusSites.wib
+    # Converted stdin, upper limit 11.63, lower limit -28.64
+    hgLoadWiggle -pathPrefix=/gbdb/hg18/wib hg18 sfrs1ConsensusSites sfrs1ConsensusSites.wig
+    ln -s $(pwd -P)/sfrs1ConsensusSites.wib /gbdb/hg18/wib/
+############################################################################