src/lib/pslShow.c 1.8

Index: src/lib/pslShow.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/lib/pslShow.c,v
retrieving revision 1.7
retrieving revision 1.8
diff -b -B -U 4 -r1.7 -r1.8
--- src/lib/pslShow.c	1 Aug 2009 09:13:15 -0000	1.7
+++ src/lib/pslShow.c	4 Aug 2009 00:26:24 -0000	1.8
@@ -120,9 +120,9 @@
 		    }
 		}
 	    }
 	}
-    cfm = cfmNew(10, 60, TRUE, qIsRc, f, qcfmStart);
+    cfm = cfmNew(10, 50, TRUE, qIsRc, f, qcfmStart);
     for (i=0; i<qSize; ++i)
 	cfmOut(cfm, qLetters[i], seqOutColorLookup[(int)colorFlags[i]]);
     cfmFree(&cfm);
     freez(&colorFlags);
@@ -176,9 +176,9 @@
 	colorFlags[ts] = socBrightBlue;
 	colorFlags[ts+sz*mulFactor-1] = socBrightBlue;
 	}
 
-    cfm = cfmNew(10, 60, TRUE, tIsRc, f, tcfmStart);
+    cfm = cfmNew(10, 50, TRUE, tIsRc, f, tcfmStart);
 	
     for (i=0; i<tSeq->size; ++i)
 	{
 	/* Put down "anchor" on first match position in haystack
@@ -206,9 +206,9 @@
     struct baf baf;
     int i,j;
 
     bafInit(&baf, qSeq->dna, qbafStart, qIsRc,
-	    tSeq->dna, tbafStart, tIsRc, f, 60, isProt);
+	    tSeq->dna, tbafStart, tIsRc, f, 50, isProt);
 		
     if (isProt)
 	{
 	for (i=0; i<psl->blockCount; ++i)