markd: changes by file
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review to branch (2009-07-27 to 2009-08-04) v212
- src/hg/hgTracks/makefile
- 1.86 lines changed: 1, context: html, text, full: html, text
allow more flexability in find SAMTools
- src/hg/hgc/makefile
- 1.63 lines changed: 1, context: html, text, full: html, text
allow more flexability in find SAMTools
- src/hg/lib/makefile
- 1.393 lines changed: 5, context: html, text, full: html, text
allow more flexability in find SAMTools
- src/hg/makeDb/doc/hg18.txt
- 1.374 lines changed: 18, context: html, text, full: html, text
added RNA Binding proteins track
- src/hg/makeDb/genbank/src/copy/gbMakeDownload
- 1.21 lines changed: 25, context: html, text, full: html, text
fixed time overflow check
- 1.20 lines changed: 24, context: html, text, full: html, text
added debugging for download build problem
- src/hg/maskOutFa/maskOutFa.c
- 1.10 lines changed: 39, context: html, text, full: html, text
add option to specify mask input format when reading from stdin. check command line options
- src/hg/mouseStuff/netFilter/netFilter.c
- 1.23 lines changed: 17, context: html, text, full: html, text
made several hard-coded parameters into command line options
- 1.22 lines changed: 4, context: html, text, full: html, text
added comment about how syntenic filtering works
- src/hg/overlapSelect/chromAnn.c
- src/hg/overlapSelect/chromAnnMap.c
- src/hg/overlapSelect/coordCols.c
- src/hg/overlapSelect/makefile
- 1.14 lines changed: 1, context: html, text, full: html, text
clean up executable
- src/hg/overlapSelect/overlapSelect.c
- src/hg/overlapSelect/rowReader.c
- src/hg/overlapSelect/selectTable.c
- src/hg/overlapSelect/tests/makefile
- 1.34 lines changed: 1, context: html, text, full: html, text
added new valgrid defs
- 1.33 lines changed: 25, context: html, text, full: html, text
added some test cases around strand
- src/hg/overlapSelect/tests/expected/xenoGpPslStatsStrandTest.stats
- 1.1 lines changed: 7, context: html, text, full: html, text
added some test cases around strand
- src/hg/overlapSelect/tests/expected/xenoPslGpStatsStrandTest.stats
- 1.1 lines changed: 7, context: html, text, full: html, text
added some test cases around strand
- src/hg/overlapSelect/tests/expected/xenoPslStatsStrandTest.stats
- 1.1 lines changed: 7, context: html, text, full: html, text
added some test cases around strand
- src/hg/overlapSelect/tests/expected/xenoPslStatsTest.stats
- 1.1 lines changed: 13, context: html, text, full: html, text
added some test cases around strand
- src/hg/overlapSelect/tests/input/xenoEst1.gp
- src/hg/overlapSelect/tests/input/xenoEst1.psl
- 1.1 lines changed: 5, context: html, text, full: html, text
added some test cases around strand
- src/hg/ratStuff/mafSplitPos/mafSplitPos.c
- 1.7 lines changed: 8, context: html, text, full: html, text
allow disabling gap or repeat spliting, fixed bug creating duplicate output, make -minRepeat actually work
- src/inc/common.mk
- 1.65 lines changed: 10, context: html, text, full: html, text
allow more flexability in find SAMTools
- src/utils/faCount/faCount.c
- 1.8 lines changed: 99, context: html, text, full: html, text
Add options for counting di-nucleotide frequencies and looking at both strands of the input sequences. (from stanford)
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