pchan: changes by commit

review to branch (2009-07-27 to 2009-08-04) v212

• Update multiz track
  • src/hg/makeDb/trackDb/lowelab/halMar1/trackDb.ra 1.14 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/haloHalo1/trackDb.ra 1.18 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/haloSali1/trackDb.ra 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/haloWals1/trackDb.ra 1.10 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/natrPhar1/trackDb.ra 1.10 - lines changed: 1, context: html, text, full: html, text
• add natrMaga0 to multiz of all halophiles
  • src/hg/archaeStuff/data/Genome-info-mods 1.71 - lines changed: 13, context: html, text, full: html, text
• take precomputed .gp and .xra for TIGR genomes if files exist
  • src/hg/archaeStuff/scripts/archaeBrowser/CDS.pm 1.13 - lines changed: 15, context: html, text, full: html, text
• put N/A to description field of table html if value doesn't exist
  • src/hg/archaeStuff/scripts/archaeBrowser/Track.pm 1.13 - lines changed: 4, context: html, text, full: html, text
• add methVulc0, methInfe0, methFerv0
  • src/hg/archaeStuff/data/Genome-info-mods 1.72 - lines changed: 56, context: html, text, full: html, text
• add methVulc0, methInfe0, methFerv0 to multiz
  • src/hg/makeDb/trackDb/lowelab/methJann1/trackDb.ra 1.13 - lines changed: 1, context: html, text, full: html, text
• turn off spectum for self blastz by Todd
  • src/hg/archaeStuff/scripts/archaeBrowser/Blast.pm 1.17 - lines changed: 1, context: html, text, full: html, text
• add BlastX_Related
  • src/hg/makeDb/trackDb/lowelab/trackDb.ra 1.79 - lines changed: 12, context: html, text, full: html, text
• add igenics track; rename igenics microarray track to igenicsMicroarray
  • src/hg/makeDb/trackDb/lowelab/trackDb.ra 1.80 - lines changed: 12, context: html, text, full: html, text
• add igenics and blastx tracks
  • src/hg/archaeStuff/scripts/archaeBrowser/Blast.pm 1.18 - lines changed: 356, context: html, text, full: html, text
  • src/hg/archaeStuff/scripts/archaeBrowser/CDS.pm 1.14 - lines changed: 135, context: html, text, full: html, text
  • src/hg/archaeStuff/scripts/archaeBrowser/Organism.pm 1.8 - lines changed: 13, context: html, text, full: html, text
  • src/hg/archaeStuff/scripts/make-browser-2.0 1.43 - lines changed: 10, context: html, text, full: html, text
• add natrMaga0 to multiz
  • src/hg/makeDb/trackDb/lowelab/haloVolc1/trackDb.ra 1.5 - lines changed: 1, context: html, text, full: html, text
• replace die with PrintErrorAndExit
  • src/hg/archaeStuff/scripts/archaeBrowser/Blast.pm 1.19 - lines changed: 2, context: html, text, full: html, text
  • src/hg/archaeStuff/scripts/archaeBrowser/CDS.pm 1.15 - lines changed: 9, context: html, text, full: html, text
• fix bug in parsing cds
  • src/hg/archaeStuff/scripts/archaeBrowser/CDS.pm 1.16 - lines changed: 1, context: html, text, full: html, text
• add support to old version of genePred
  • src/hg/archaeStuff/scripts/archaeBrowser/CDS.pm 1.17 - lines changed: 6, context: html, text, full: html, text
• add index for target field in blast Hits table
  • src/hg/archaeStuff/scripts/archaeBrowser/Blast.pm 1.20 - lines changed: 3, context: html, text, full: html, text
• add --cleanblast to delete private genomes from blastp and blastx hits
  • src/hg/archaeStuff/scripts/archaeBrowser/OrganismDb.pm 1.38 - lines changed: 93, context: html, text, full: html, text
  • src/hg/archaeStuff/scripts/make-browser-2.0 1.44 - lines changed: 4, context: html, text, full: html, text