src/hg/archaeStuff/data/Genome-info-mods 1.69
1.69 2009/07/27 02:40:43 pchan
remove short contigs from natrMaga0
Index: src/hg/archaeStuff/data/Genome-info-mods
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/archaeStuff/data/Genome-info-mods,v
retrieving revision 1.68
retrieving revision 1.69
diff -b -B -U 4 -r1.68 -r1.69
--- src/hg/archaeStuff/data/Genome-info-mods 15 Jul 2009 02:47:08 -0000 1.68
+++ src/hg/archaeStuff/data/Genome-info-mods 27 Jul 2009 02:40:43 -0000 1.69
@@ -399,8 +399,10 @@
Pub_id: 0
#Pub_id: 12807211
Rel_date: June 2009
SP_ID: PYRKO
+Multiz: Thermococcales therKoda1 therOnnu1 therBaro0 therSibi1 pyrFur2 pyrHor1 pyrAby1
+Phylo: ((pyrFur2,(pyrHor1,pyrAby1)),((therGamm1,(therKoda1,therOnnu1)),(therBaro0,therSibi1)))
Org_abr: Ther_sibi_MM_739
Menu_name: Thermococcus sibiricus
DB_name: therSibi1
@@ -408,8 +410,10 @@
Seq_acc: NC_012883
Name_chg: chr
Pub_id: 11354459
Rel_date: July 2009
+Multiz: Thermococcales therBaro0 therOnnu1 therKoda1 therGamm1 pyrFur2 pyrHor1 pyrAby1
+Phylo: ((pyrFur2,(pyrHor1,pyrAby1)),((therGamm1,(therKoda1,therOnnu1)),(therBaro0,therSibi1)))
Org_abr: Sulf_acid_DSM_639
Menu_name: Sulfolobus acidocaldarius
Iso_pub: 4559703
@@ -813,19 +817,23 @@
Tax_ID: 547559: Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natrialba.
TIGR_ID: 0
Dom_ct: &Meth_hung_JF-1
Gen_ID: 0
-Seq_acc: Nmag-assembly-04-2009 Contig73 Contig74 Contig75 Contig1 Contig2 Contig3 Contig4 Contig5 Contig6 Contig7 Contig8 Contig9 Contig10 Contig11 Contig12 Contig13 Contig14 Contig15 Contig16 Contig17 Contig18 Contig19 Contig20 Contig21 Contig22 Contig23 Contig24 Contig25 Contig26 Contig27 Contig28 Contig29 Contig30 Contig31 Contig32 Contig33 Contig34 Contig35 Contig36 Contig37 Contig38 Contig39 Contig40 Contig41 Contig42 Contig43 Contig44 Contig45 Contig46 Contig47 Contig48 Contig49 Contig50 Contig51 Contig52 Contig53 Contig54 Contig55 Contig56 Contig57 Contig58 Contig59 Contig60 Contig61 Contig62 Contig63 Contig64 Contig65 Contig66 Contig67 Contig68 Contig69 Contig70 Contig71 Contig72
-Name_chg: Contig73 Contig74 Contig75 Contig1 Contig2 Contig3 Contig4 Contig5 Contig6 Contig7 Contig8 Contig9 Contig10 Contig11 Contig12 Contig13 Contig14 Contig15 Contig16 Contig17 Contig18 Contig19 Contig20 Contig21 Contig22 Contig23 Contig24 Contig25 Contig26 Contig27 Contig28 Contig29 Contig30 Contig31 Contig32 Contig33 Contig34 Contig35 Contig36 Contig37 Contig38 Contig39 Contig40 Contig41 Contig42 Contig43 Contig44 Contig45 Contig46 Contig47 Contig48 Contig49 Contig50 Contig51 Contig52 Contig53 Contig54 Contig55 Contig56 Contig57 Contig58 Contig59 Contig60 Contig61 Contig62 Contig63 Contig64 Contig65 Contig66 Contig67 Contig68 Contig69 Contig70 Contig71 Contig72
-Seq_size: 58508 254969 4128710 983 869 1014 924 921 989 977 924 952 927 1398 1347 1265 935 1002 932 985 929 880 976 924 914 958 942 620 1013 865 961 554 997 938 900 905 947 976 611 766 965 759 969 924 920 985 865 951 938 925 960 893 922 854 997 935 1072 708 1288 1548 1514 1712 1239 1715 1400 1777 1675 1644 1935 1467 1992 2000 1381 1075 2013
-Seq_GC: 61.91 56.82 61.3 61.44 60.53 64.2 61.58 58.52 41.35 62.74 61.47 63.13 60.73 61.3 58.28 63.64 59.68 57.58 53.97 65.58 61.79 58.18 56.45 61.26 62.47 58.98 60.51 55.48 54.89 62.89 55.98 65.52 59.68 61.3 64.11 60.55 67.05 48.77 68.41 65.4 56.48 60.34 57.79 59.96 54.24 60.51 59.88 62.04 61.62 64.22 60.73 63.38 56.4 54.68 61.08 62.99 63.15 61.44 62.66 61.5 64.66 73.89 61.99 59.48 59.21 61.11 62.69 61.74 61.65 64.21 61.14 54.75 60.32 63.07 63.54
+Seq_acc: Nmag-assembly-04-2009 Contig73 Contig74 Contig75
+Name_chg: Contig73 Contig74 Contig75
+Seq_size: 58508 254969 4128710
+Seq_GC: 61.91 56.82 61.3
+#Seq_acc: Nmag-assembly-04-2009 Contig73 Contig74 Contig75 Contig1 Contig2 Contig3 Contig4 Contig5 Contig6 Contig7 Contig8 Contig9 Contig10 Contig11 Contig12 Contig13 Contig14 Contig15 Contig16 Contig17 Contig18 Contig19 Contig20 Contig21 Contig22 Contig23 Contig24 Contig25 Contig26 Contig27 Contig28 Contig29 Contig30 Contig31 Contig32 Contig33 Contig34 Contig35 Contig36 Contig37 Contig38 Contig39 Contig40 Contig41 Contig42 Contig43 Contig44 Contig45 Contig46 Contig47 Contig48 Contig49 Contig50 Contig51 Contig52 Contig53 Contig54 Contig55 Contig56 Contig57 Contig58 Contig59 Contig60 Contig61 Contig62 Contig63 Contig64 Contig65 Contig66 Contig67 Contig68 Contig69 Contig70 Contig71 Contig72
+#Name_chg: Contig73 Contig74 Contig75 Contig1 Contig2 Contig3 Contig4 Contig5 Contig6 Contig7 Contig8 Contig9 Contig10 Contig11 Contig12 Contig13 Contig14 Contig15 Contig16 Contig17 Contig18 Contig19 Contig20 Contig21 Contig22 Contig23 Contig24 Contig25 Contig26 Contig27 Contig28 Contig29 Contig30 Contig31 Contig32 Contig33 Contig34 Contig35 Contig36 Contig37 Contig38 Contig39 Contig40 Contig41 Contig42 Contig43 Contig44 Contig45 Contig46 Contig47 Contig48 Contig49 Contig50 Contig51 Contig52 Contig53 Contig54 Contig55 Contig56 Contig57 Contig58 Contig59 Contig60 Contig61 Contig62 Contig63 Contig64 Contig65 Contig66 Contig67 Contig68 Contig69 Contig70 Contig71 Contig72
+#Seq_size: 58508 254969 4128710 983 869 1014 924 921 989 977 924 952 927 1398 1347 1265 935 1002 932 985 929 880 976 924 914 958 942 620 1013 865 961 554 997 938 900 905 947 976 611 766 965 759 969 924 920 985 865 951 938 925 960 893 922 854 997 935 1072 708 1288 1548 1514 1712 1239 1715 1400 1777 1675 1644 1935 1467 1992 2000 1381 1075 2013
+#Seq_GC: 61.91 56.82 61.3 61.44 60.53 64.2 61.58 58.52 41.35 62.74 61.47 63.13 60.73 61.3 58.28 63.64 59.68 57.58 53.97 65.58 61.79 58.18 56.45 61.26 62.47 58.98 60.51 55.48 54.89 62.89 55.98 65.52 59.68 61.3 64.11 60.55 67.05 48.77 68.41 65.4 56.48 60.34 57.79 59.96 54.24 60.51 59.88 62.04 61.62 64.22 60.73 63.38 56.4 54.68 61.08 62.99 63.15 61.44 62.66 61.5 64.66 73.89 61.99 59.48 59.21 61.11 62.69 61.74 61.65 64.21 61.14 54.75 60.32 63.07 63.54
Gene_ct: 0
Pub_id:
Rel_date: Private
Seq_src: Joint Genome Institute
Trna_opt: -o# -f# -m# -F# -HyA
Trna_abr: Natr_maga-tRNAs
-Multiz: Halophiles haloWals1 natrPhar1 haloHalo1 haloSali1 halMar1
+Multiz: Halophiles haloHalo1 haloSali1 natrPhar1 halMar1 haloWals1 haloVolc1
Phylo: (((((haloHalo1,haloSali1),natrMaga0),natrPhar1),halMar1),(haloWals1,haloVolc1))
Org_abr: Carb_hydr_Z-2901
Org_name: Carboxydothermus hydrogenoformans Z-2901