src/hg/overlapSelect/tests/makefile 1.32
1.32 2009/07/22 07:01:29 markd
fixed bug when doing stranded overlap with psls
Index: src/hg/overlapSelect/tests/makefile
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/overlapSelect/tests/makefile,v
retrieving revision 1.31
retrieving revision 1.32
diff -b -B -U 4 -r1.31 -r1.32
--- src/hg/overlapSelect/tests/makefile 14 Jan 2009 00:21:21 -0000 1.31
+++ src/hg/overlapSelect/tests/makefile 22 Jul 2009 07:01:29 -0000 1.32
@@ -27,9 +27,10 @@
idMatchTests \
rangeTests \
cds_id_out_gp \
wideTest \
- name2EmptyTest
+ name2EmptyTest \
+ orthoStrandTest
###
# selecting PSLs
###
@@ -743,8 +744,12 @@
${OVERSEL} input/name2Empty.gp input/name2Empty.gp output/$@.gp
genePredCheck -verbose=0 output/$@.gp
${DIFF} expected/$@.gp output/$@.gp
+# psl strand regression
+orthoStrandTest: mkout
+ ${OVERSEL} -strand -aggregate -statsOutputAll input/orthoSel.psl input/orthoIn.gp output/$@.stats
+ ${DIFF} expected/$@.stats output/$@.stats
mkout:
@${MKDIR} output