src/hg/makeDb/trackDb/genscan.html 1.16

Index: src/hg/makeDb/trackDb/genscan.html
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/genscan.html,v
retrieving revision 1.15
retrieving revision 1.16
diff -b -B -U 1000000 -r1.15 -r1.16
--- src/hg/makeDb/trackDb/genscan.html	16 Jul 2009 18:31:34 -0000	1.15
+++ src/hg/makeDb/trackDb/genscan.html	24 Jul 2009 19:21:39 -0000	1.16
@@ -1,48 +1,48 @@
 <H2>Description</H2>
 <P>
 This track shows predictions from the 
 <A HREF="http://genes.mit.edu/GENSCAN.html" TARGET=_blank>Genscan</A> program 
 written by <A HREF="http://genes.mit.edu/chris/" TARGET=_blank>Chris Burge</A>.
 The predictions are based on transcriptional, 
 translational, and donor/acceptor splicing signals, as well as the length 
 and compositional distributions of exons, introns and intergenic regions.</P>
 
 <H2>Display Conventions and Configuration</H2>
 <P>
 This track follows the display conventions for 
 <A HREF="../goldenPath/help/hgTracksHelp.html#GeneDisplay">gene prediction 
 tracks</A>. 
 <P>
 The track description page offers the following filter and configuration
 options:
 <UL>
 <LI><B>Color track by codons:</B> Select the <em>genomic codons</em> option
 to color and label each codon in a zoomed-in display to facilitate validation 
 and comparison of gene predictions. Click 
 <A HREF="../goldenPath/help/hgCodonColoring.html">here</A> for more 
 information about this feature.
 </UL></P>
 
 <H2>Methods</H2>
 <P>
 For a description of the Genscan program and the model that underlies it, 
 refer to Burge and Karlin (1997) in the References section below. 
 The splice site models used are described in more detail in Burge (1998)
 below. </P>
 
 <H2>Credits</H2>
-Thanks to Chris Burge for providing these data.
+Thanks to Chris Burge for providing the Genscan program.
 
 <H2>References</H2>
 <P>
 Burge C. 
 Modeling Dependencies in Pre-mRNA Splicing Signals. 
 In Salzberg S, Searls D, Kasif S, eds. 
-<A HREF="http://www.cs.jhu.edu/~salzberg/compbio-book.html" 
+<A HREF="http://www.cbcb.umd.edu/~salzberg/compbio-book.html"
 TARGET=_blank><em>Computational Methods in Molecular Biology</em></A>, 
 Elsevier Science, Amsterdam. 1998;127-163. </P>
 <P>
 Burge C, Karlin S. 
 <A HREF="http://dx.doi.org/10.1006/jmbi.1997.0951"
 TARGET=_blank>Prediction of Complete Gene Structures in Human Genomic DNA</A>.
 <em>J. Mol. Biol.</em> 1997 Apr 25;268(1):78-94. </P>