src/hg/lib/makefile 1.392

1.392 2009/07/27 21:52:08 angie
Libified the code that interfaces directly with libbam to open, fetch, close.

Index: src/hg/lib/makefile
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/lib/makefile,v
retrieving revision 1.391
retrieving revision 1.392
diff -b -B -U 4 -r1.391 -r1.392
--- src/hg/lib/makefile	4 Jul 2009 07:14:20 -0000	1.391
+++ src/hg/lib/makefile	27 Jul 2009 21:52:08 -0000	1.392
@@ -1,13 +1,16 @@
 include ../../inc/common.mk
 XINC = -I$(MYSQLINC)
 
 L += -lm $(MYSQLLIBS)
+ifeq (${USE_BAM},1)
+    L += ${SAMPATH}/libbam.a
+endif
 
 O = acemblyClass.o affyAllExonProbe.o affyAtlas.o affy10KDetails.o affy120KDetails.o \
     affyOffset.o affyPairs.o agp.o agpFrag.o agpGap.o alignSeqSizes.o altGraph.o \
     altGraphX.o ancientRref.o atomDb.o  axtInfo.o \
-    axtLib.o bactigPos.o baseMaskCommon.o bdgpExprLink.o bdgpGeneInfo.o \
+    axtLib.o bactigPos.o bamFile.o baseMaskCommon.o bdgpExprLink.o bdgpGeneInfo.o \
     bed.o bed5FloatScore.o bed5Pval.o bed6FloatScore.o bed12Source.o \
     bedCart.o bgiGeneInfo.o bgiGeneSnp.o bgiSnp.o bioImage.o \
     blastTab.o blastzNet.o blatServers.o borf.o borkPseudoHom.o botDelay.o\
     cart.o cartDb.o cdsEvidence.o cdsOrtho.o cdsPick.o cdsSpec.o \