braney: changes by file

branch to review (2009-07-21 to 2009-07-27) v211

• src/hg/encode/encodeValidate/config/cv.ra
  • 1.121 lines changed: 16, context: html, text, full: html, text
    temporarily add U87 and BE2_C to get some HudonAlpha data loaded
• src/hg/makeDb/doc/loxAfr3.txt
  • 1.3 lines changed: 20, context: html, text, full: html, text
    added human proteins track
  • 1.2 lines changed: 163, context: html, text, full: html, text
    start human proteins track
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.462 lines changed: 60, context: html, text, full: html, text
    took out views, and added replicate in matrix for HA Methyl tracks
  • 1.461 lines changed: 30, context: html, text, full: html, text
    some rearrangements and track suppression for HA Methyl tracks
  • 1.460 lines changed: 1, context: html, text, full: html, text
    change default visibility on HudsonalphaCNV track
  • 1.459 lines changed: 38, context: html, text, full: html, text
    add wiggles to the CNV track
  • 1.456 lines changed: 49, context: html, text, full: html, text
    fixed HudsonAlpha CNV track
  • 1.455 lines changed: 255, context: html, text, full: html, text
    added new Hudsonalpha cell types and factors for ChIP-seq track
  • 1.437 lines changed: 110, context: html, text, full: html, text
    added HudsonAlpha ChIP-seq celltypes U87 and BE2_C vs NRSF
  • 1.435 lines changed: 136, context: html, text, full: html, text
    HudsonAlpha GM12878 TAF-II PU.1 Pbx3 Oct-2
  • 1.434 lines changed: 54, context: html, text, full: html, text
    HudsonAlpha ChIP-sec PFSK-1 NRSF
  • 1.433 lines changed: 46, context: html, text, full: html, text
    HudsonAlpha ChIPsec HeLa-S3 Pol2
  • 1.432 lines changed: 55, context: html, text, full: html, text
    added HudsonAlpha ChIP-seq SK-N-SH_RA vs. NRSF
  • 1.431 lines changed: 54, context: html, text, full: html, text
    added Hudsonalpha ChIP PANC-1 vs NRSF
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaMethyl27.html
  • 1.8 lines changed: 6, context: html, text, full: html, text
    add Rami as contact
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaMethylSeq.html
  • 1.8 lines changed: 5, context: html, text, full: html, text
    add Rami as contact