mikep: changes by commit

branch to review (2009-07-21 to 2009-07-27) v211

• removing GIS PET Tags views
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.430 - lines changed: 53, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.html 1.8 - lines changed: 2, context: html, text, full: html, text
• shortening name
  • src/hg/encode/DAFs/CshlLongRnaSeq.daf 1.3 - lines changed: 2, context: html, text, full: html, text
• adding Plus/Minus Raw Signal Views
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.440 - lines changed: 26, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlLoRnaSeq.html 1.4 - lines changed: 2, context: html, text, full: html, text
• metadata missing from Helicos
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.441 - lines changed: 6, context: html, text, full: html, text
• user-friendly names in subgroup
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.442 - lines changed: 2, context: html, text, full: html, text
• fixing up controlled vocab so clickable link works in config box
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.443 - lines changed: 5, context: html, text, full: html, text
• added contacts
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlLoRnaSeq.html 1.5 - lines changed: 7, context: html, text, full: html, text
• adding ranges for CSHL Long RNASEQ wiggles
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.444 - lines changed: 2, context: html, text, full: html, text
• removed unused subgroups to get rid of trackDb warning
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.450 - lines changed: 10, context: html, text, full: html, text
• color by strand
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.452 - lines changed: 2, context: html, text, full: html, text
• fixing GM colorByStrand on GisPet
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.453 - lines changed: 2, context: html, text, full: html, text
• configurable tracks
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.454 - lines changed: 2, context: html, text, full: html, text
• check sequence or seq1/seq2 match the genome for tagAlign and pairedTagAlign files
  • src/hg/encode/validateFiles/validateFiles.c 1.19 - lines changed: 130, context: html, text, full: html, text
• free the dna
  • src/hg/encode/validateFiles/validateFiles.c 1.20 - lines changed: 3, context: html, text, full: html, text
• link to source data on Helicos
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHelicosRnaSeq.html 1.9 - lines changed: 3, context: html, text, full: html, text
• added warning about link
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHelicosRnaSeq.html 1.11 - lines changed: 2, context: html, text, full: html, text