src/hg/lib/altGraphX.c 1.37

Index: src/hg/lib/altGraphX.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/lib/altGraphX.c,v
retrieving revision 1.36
retrieving revision 1.37
diff -b -B -U 4 -r1.36 -r1.37
--- src/hg/lib/altGraphX.c	20 Feb 2008 00:42:30 -0000	1.36
+++ src/hg/lib/altGraphX.c	13 Aug 2009 03:08:30 -0000	1.37
@@ -592,9 +592,9 @@
 AllocArray(em, vertexCount);
 AllocArray(seen, vertexCount);
 for (i=0; i<vertexCount; ++i)
     {
-    em[i] = AllocArray(em[i], vertexCount);
+    AllocArray(em[i], vertexCount);
     }
 for (i=0; i<ag->edgeCount; ++i)
     em[ag->edgeStarts[i]][ag->edgeEnds[i]] = TRUE;
 
@@ -1048,10 +1048,10 @@
 bed->chromStart = bed->thickStart = vPos[starts[fpEdge]];
 bed->chromEnd = bed->thickEnd = vPos[ends[tpEdge]];
 bed->name = cloneString(ag->name);
 bed->blockCount = numBlocks;
-bed->blockSizes = AllocArray(bed->blockSizes, numBlocks);
-bed->chromStarts = AllocArray(bed->chromStarts, numBlocks);
+AllocArray(bed->blockSizes, numBlocks);
+AllocArray(bed->chromStarts, numBlocks);
 bed->blockSizes[0] = vPos[ends[fpEdge]] - vPos[starts[fpEdge]];
 bed->blockSizes[1] = vPos[ends[cassEdge]] - vPos[starts[cassEdge]];
 bed->blockSizes[2] = vPos[ends[tpEdge]] - vPos[starts[tpEdge]];
 bed->chromStarts[0] = vPos[starts[fpEdge]] -bed->chromStart;
@@ -1059,10 +1059,10 @@
 bed->chromStarts[2] = vPos[starts[tpEdge]] -bed->chromStart;
 bed->score = getEvidenceCount(ag,fpEdge)+ getEvidenceCount(ag, tpEdge);
 
 bed->expCount = numBlocks;
-bed->expIds = AllocArray(bed->expIds, numBlocks);
-bed->expScores = AllocArray(bed->expScores, numBlocks);
+AllocArray(bed->expIds, numBlocks);
+AllocArray(bed->expScores, numBlocks);
 bed->expIds[0] = fpEdge;
 bed->expIds[1] = cassEdge;
 bed->expIds[2] = tpEdge;
 return bed;