src/hg/makeDb/schema/all.joiner 1.731

Index: src/hg/makeDb/schema/all.joiner
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/schema/all.joiner,v
retrieving revision 1.730
retrieving revision 1.731
diff -b -B -U 4 -r1.730 -r1.731
--- src/hg/makeDb/schema/all.joiner	6 Aug 2009 21:02:44 -0000	1.730
+++ src/hg/makeDb/schema/all.joiner	12 Aug 2009 19:29:35 -0000	1.731
@@ -36,8 +36,9 @@
 set loxAfr loxAfr3
 set mm mm6,mm7,mm8,mm9
 set monDom monDom1,monDom4,monDom5
 set ornAna ornAna1
+set oryCun oryCun2
 set oryLat oryLat2
 set panTro panTro1,panTro2
 set petMar petMar1
 set ponAbe ponAbe2
@@ -46,20 +47,20 @@
 set rn rn3,rn4
 set sacCer sacCer1,sacCer2
 set strPur strPur1,strPur2
 set taeGut taeGut1
-set tetNig tetNig1
+set tetNig tetNig1,tetNig2
 set xenTro xenTro1,xenTro2
 
 # Define all organism/assembly-specific databases.
-set gbd $hg,$mm,$rn,$fr,$ce,$cb,$dm,$dp,$sacCer,$panTro,$galGal,$ci,$danRer,$canFam,$droYak,$droMult,$anoGam,$apiMel,$cioSav,$tetNig,$xenTro,$monDom,$bosTau,$rheMac,$strPur,$felCat,$gasAcu,$oryLat,$equCab,$anoCar,$ornAna,$caePb,$caeRem,$caeJap,$priPac,$ponAbe,$calJac,$cavPor,$petMar,$braFlo,$taeGut,$gorGor,$aplCal,$loxAfr
+set gbd $hg,$mm,$rn,$fr,$ce,$cb,$dm,$dp,$sacCer,$panTro,$galGal,$ci,$danRer,$canFam,$droYak,$droMult,$anoGam,$apiMel,$cioSav,$tetNig,$xenTro,$monDom,$bosTau,$rheMac,$strPur,$felCat,$gasAcu,$oryCun,$oryLat,$equCab,$anoCar,$ornAna,$caePb,$caeRem,$caeJap,$priPac,$ponAbe,$calJac,$cavPor,$petMar,$braFlo,$taeGut,$gorGor,$aplCal,$loxAfr
 
 # Define organism databases based on whole-genome shotgun projects
 # (Assembly based on WGS project contigs accessioned in Genbank)
-set wgs $rn,$panTro,$galGal,$canFam,$bosTau,$felCat,$monDom,$tetNig,$fr,$oryLat,$calJac,$cavPor,$taeGut
+set wgs $rn,$panTro,$galGal,$canFam,$bosTau,$felCat,$monDom,$tetNig,$fr,$oryCun,$oryLat,$calJac,$cavPor,$taeGut
 
 # Define organism databases for which we build a xenoRefGene track:
-set xrg $panTro,$galGal,$ci,$canFam,$dp,$droYak,$droMult,$bosTau,$rn,$hg,$rheMac,$monDom,$felCat,$oryLat,$anoCar,$caePb,$caeRem,$caeJap,$cb,$mm,$priPac,$strPur,$ponAbe,$calJac,$petMar,$braFlo,$ce,$taeGut
+set xrg $panTro,$galGal,$ci,$canFam,$dp,$droYak,$droMult,$bosTau,$rn,$hg,$rheMac,$monDom,$felCat,$oryCun,$oryLat,$anoCar,$caePb,$caeRem,$caeJap,$cb,$mm,$priPac,$strPur,$ponAbe,$calJac,$petMar,$braFlo,$ce,$taeGut
 
 # Define organism databases for which we build a SNP track:
 set snpDb130 hg18
 set snpDb129 hg18
@@ -81,9 +82,9 @@
 set zooDb zooBaboon3,zooCat3,zooChicken3,zooChimp3,zooCow3,zooDog3,zooFugu3,zooHuman3,zooMouse3,zooPig3,zooRat3,zooTetra3,zooZebrafish3
 
 # Define transMap databases
 # transMapDb not public: dasNov1,echTel1,loxAfr1,oryCun1,otoGar1
-set transMapDb anoCar1,bosTau4,calJac1,canFam2,cavPor3,danRer5,equCab2,felCat3,fr2,galGal3,gasAcu1,hg18,loxAfr3,mm9,monDom4,ornAna1,oryLat2,panTro2,petMar1,ponAbe2,rheMac2,rn4,tetNig1,xenTro2
+set transMapDb anoCar1,bosTau4,calJac1,canFam2,cavPor3,danRer5,equCab2,felCat3,fr2,galGal3,gasAcu1,hg18,loxAfr3,mm9,monDom4,ornAna1,oryCun2,oryLat2,panTro2,petMar1,ponAbe2,rheMac2,rn4,tetNig1,tetNig2,xenTro2
 
 # Set up list of databases we ignore and those we check.  Program
 # will complain about other databases.
 databasesChecked $gbd,$otherDb