src/lib/bigBed.c 1.20
1.20 2009/08/12 21:36:26 kent
Moving some functions from bedGraphToBigBed to library.
Index: src/lib/bigBed.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/lib/bigBed.c,v
retrieving revision 1.19
retrieving revision 1.20
diff -b -B -U 4 -r1.19 -r1.20
--- src/lib/bigBed.c 11 Jun 2009 16:43:01 -0000 1.19
+++ src/lib/bigBed.c 12 Aug 2009 21:36:26 -0000 1.20
@@ -311,9 +311,9 @@
slReverse(&outList);
return outList;
}
-static void bigBedFileCreateReadInfile(
+static void bigBedFileCreateReadInFile(
char *inName, /* Input file in a tabular bed format <chrom><start><end> + whatever. */
char *chromSizes, /* Two column tab-separated file: <chromosome> <size>. */
int blockSize, /* Number of items to bundle in r-tree. 1024 is good. */
int itemsPerSlot, /* Number of items in lowest level of tree. 64 is good. */
@@ -587,9 +587,9 @@
double averageSize = 0;
struct asObject *as = NULL;
struct hash *chromHash = NULL;
struct ppBed *pbList = NULL;
-bigBedFileCreateReadInfile(inName, chromSizes, blockSize, itemsPerSlot, definedFieldCount,
+bigBedFileCreateReadInFile(inName, chromSizes, blockSize, itemsPerSlot, definedFieldCount,
asFileName, clip, outName, &pbList, &count, &averageSize, &chromHash, &fieldCount, &as,
&fullSize);
bigBedFileCreateDetailed(pbList, count, averageSize, inName, chromHash, blockSize, itemsPerSlot,
definedFieldCount, fieldCount, asFileName, as, fullSize, outName);