markd: changes by file

review to branch (2009-08-10 to 2009-08-18) v213

• src/hg/hgTracks/chainTrack.c
  • 1.35 lines changed: 6, context: html, text, full: html, text
    simplify computer chain normalized score gray scale suggest by jk
  • 1.34 lines changed: 4, context: html, text, full: html, text
    don't allow chain item to g white with normalize score
• src/hg/hgc/rnaFoldClick.c
  • 1.8 lines changed: 1, context: html, text, full: html, text
    fixed misuse of AllocVar macro detected by gcc 4.5
• src/hg/js/cpJsFiles.pl
  • 1.3 lines changed: 15, context: html, text, full: html, text
    always get modification time right
• src/hg/lib/altGraphX.c
  • 1.37 lines changed: 5, context: html, text, full: html, text
    fixed misuse of AllocVar macro detected by gcc 4.5
• src/hg/lib/geneGraph.c
  • 1.25 lines changed: 3, context: html, text, full: html, text
    fixed misuse of AllocVar macro detected by gcc 4.5
• src/hg/txGraph/txgAddEvidence/txgAddEvidence.c
  • 1.14 lines changed: 1, context: html, text, full: html, text
    fixed misuse of AllocVar macro detected by gcc 4.5
• src/hg/utils/makefile
  • 1.15 lines changed: 56, context: html, text, full: html, text
    added make test, simplify rules
  • 1.14 lines changed: 5, context: html, text, full: html, text
    added initial implementation of gff3ToGenePred converter
• src/hg/utils/automation/makefile
  • 1.14 lines changed: 4, context: html, text, full: html, text
    added make test, simplify rules
• src/inc/gff3.h
  • 1.2 lines changed: 53, context: html, text, full: html, text
    added initial implementation of gff3ToGenePred converter
• src/lib/errCatch.c
  • 1.3 lines changed: 1, context: html, text, full: html, text
    fix using variable string where a format should be, detected by gcc 4.3.3
• src/lib/gff3.c
  • 1.3 lines changed: 33, context: html, text, full: html, text
    added initial implementation of gff3ToGenePred converter