src/hg/makeDb/doc/danRer5.txt 1.17

Index: src/hg/makeDb/doc/danRer5.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/danRer5.txt,v
retrieving revision 1.16
retrieving revision 1.17
diff -b -B -U 4 -r1.16 -r1.17
--- src/hg/makeDb/doc/danRer5.txt	21 Jul 2009 21:01:41 -0000	1.16
+++ src/hg/makeDb/doc/danRer5.txt	10 Aug 2009 16:38:35 -0000	1.17
@@ -3144,4 +3144,19 @@
    svn+ssh://hgwdev.cse.ucsc.edu/projects/compbio/usr/markd/svn/projs/transMap/tags/vertebrate.2009-07-01
 
 see doc/builds.txt for specific details.
 ############################################################################
+# SWAP BLASTZ FOR DOG (canFam2) (DONE, 2009-08-08, hartera)
+# CREATE CHAIN AND NET TRACKS, AXTNET, MAFNET AND ALIGNMENT DOWNLOADS
+# See canFam2.txt for creation of zebrafish chain and net tracks and downloads
+# on the dog genome assembly.
+    mkdir /hive/data/genomes/danRer5/bed/blastz.canFam2.swap
+    cd /hive/data/genomes/danRer5/bed/blastz.canFam2.swap
+    
+    time nice doBlastzChainNet.pl -chainMinScore=5000 -chainLinearGap=loose \
+	-swap /hive/data/genomes/canFam2/bed/blastz.danRer5.2009-08-07/DEF \
+	-workhorse=hgwdev -smallClusterHub=memk -bigClusterHub=pk \
+        -chainMinScore=5000 -chainLinearGap=loose \
+	>& doBlastz.swap.log &
+    cat fb.danRer5.chainCanFam2Link.txt 
+    # 32053647 bases of 1435609608 (2.233%) in intersection
+