src/hg/makeDb/doc/danRer6.txt 1.7

Index: src/hg/makeDb/doc/danRer6.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/danRer6.txt,v
retrieving revision 1.6
retrieving revision 1.7
diff -b -B -U 4 -r1.6 -r1.7
--- src/hg/makeDb/doc/danRer6.txt	6 Aug 2009 21:30:46 -0000	1.6
+++ src/hg/makeDb/doc/danRer6.txt	6 Aug 2009 22:13:19 -0000	1.7
@@ -11,9 +11,9 @@
 #  Assembly notes:
 #    http://www.sanger.ac.uk/Projects/D_rerio/
 #    http://www.sanger.ac.uk/Projects/D_rerio/Zv8_assembly_information.shtml
 
-# TODO this comment is copied over and may need removal
+# TODO this comment is copied over from old makedoc and may need removal
 #  NOTE:  this doc may have genePred loads that fail to include
 #  the bin column.  Please correct that for the next build by adding
 #  a bin column when you make any of these tables:
 #
@@ -800,9 +800,19 @@
 spectrum on
 type chain danRer6
 otherDb danRer6
 
-
+    # Finish chainSelf downloads
+    cd /hive/data/genomes/danRer6/bed/lastzSelf.2009-07-30/axtChain
+    md5sum danRer6.danRer6.all.chain.gz >> ../md5sum.txt
+    cd ..
+    cp /usr/local/apache/htdocs/goldenPath/hg19/vsSelf/README.txt .
+    vi README.txt
+    mkdir /usr/local/apache/htdocs/goldenPath/danRer6/vsSelf
+    cd /usr/local/apache/htdocs/goldenPath/danRer6/vsSelf
+    ln -s /hive/data/genomes/danRer6/bed/lastzSelf.2009-07-30/axtChain/danRer6.danRer6.all.chain.gz .
+    ln -s /hive/data/genomes/danRer6/bed/lastzSelf.2009-07-30/README.txt .
+    ln -s /hive/data/genomes/danRer6/bed/lastzSelf.2009-07-30/md5sum.txt .
 
 #######################################################################
 # Finish danRer6.2bit in downloads (done 2009-07-31)
 #