braney: changes by file

branch to review (2009-08-04 to 2009-08-10) v212

• src/hg/encode/validateFiles/makefile
  • 1.2 lines changed: 8, context: html, text, full: html, text
    add some tests
• src/hg/encode/validateFiles/validateFiles.c
  • 1.25 lines changed: 1, context: html, text, full: html, text
    change printf to verbose
  • 1.24 lines changed: 14, context: html, text, full: html, text
    more mismatch tweaks
  • 1.23 lines changed: 47, context: html, text, full: html, text
    add options to ignore N's in mismatching and to deal more efficiently with sorted files (assuming there are a lot of records)
  • 1.22 lines changed: 3, context: html, text, full: html, text
    properly deal with the N word
• src/hg/makeDb/doc/tetNig2.txt
  • 1.4 lines changed: 166, context: html, text, full: html, text
    make Human Proteins track. Needs re-doing to deal with chrUn correctly
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.481 lines changed: 6, context: html, text, full: html, text
    another typo.... darned Mondays
  • 1.480 lines changed: 6, context: html, text, full: html, text
    oops... fix a typo in dataSubmitted and dataRestricted
  • 1.479 lines changed: 6, context: html, text, full: html, text
    fix up dates for HudsonalphaCnv track. Also change dataType to CNV
  • 1.478 lines changed: 12, context: html, text, full: html, text
    have everything right (methinks) except dates and dataType for HA CNV tracks
  • 1.477 lines changed: 36, context: html, text, full: html, text
    added some HudsonAlphaCNV stuff... not quite done but need to test something
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaCnv.html
  • 1.2 lines changed: 35, context: html, text, full: html, text
    changes from Kate
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaMethyl27.html
  • 1.11 lines changed: 2, context: html, text, full: html, text
    changed first person to passive voice. English teachers everywhere feel a tremour in the force.
  • 1.10 lines changed: 1, context: html, text, full: html, text
    changed red to orange for methyl calls
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaMethylSeq.html
  • 1.10 lines changed: 26, context: html, text, full: html, text
    changed first person to passive voice. English teachers everywhere feel a tremour in the force.
  • 1.9 lines changed: 2, context: html, text, full: html, text
    fixed publication date