hiram: changes by file

review to branch (2009-08-25 to 2009-09-02) v214

• src/hg/hgTracks/chainTrack.c
  • 1.36 lines changed: 4, context: html, text, full: html, text
    For the three tracks that need normScoreAvailable detected, look into the trackDb instead of two describe queries to every chain track.
• src/hg/makeDb/doc/loxAfr3.txt
  • 1.4 lines changed: 20, context: html, text, full: html, text
    lastz alignments done between mouse and elephant
• src/hg/makeDb/doc/mm9.txt
  • 1.107 lines changed: 55, context: html, text, full: html, text
    lastz alignments done between mouse and elephant
• src/hg/makeDb/schema/dbSnoop/dbSnoop.c
  • 1.14 lines changed: 2, context: html, text, full: html, text
    Need to back quote escape table names to avoid problems with tables that are SQL reserved words
• src/hg/makeDb/trackDb/trackDb.ra
  • 1.527 lines changed: 24, context: html, text, full: html, text
    Remove the separate monDom5 chain and net entry
• src/hg/makeDb/trackDb/human/hg17/trackDb.ra
  • 1.426 lines changed: 1, context: html, text, full: html, text
    Turn on chainNormScoreAvailable for all the chainSelf tracks
• src/hg/makeDb/trackDb/human/hg18/trackDb.ra
  • 1.414 lines changed: 2, context: html, text, full: html, text
    Turn on chainNormScoreAvailable for all the chainSelf tracks
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • 1.47 lines changed: 1, context: html, text, full: html, text
    Turn on chainNormScoreAvailable for all the chainSelf tracks