src/hg/inc/bamFile.h 1.5

1.5 2009/08/21 05:22:01 angie
Added bamToFfAli (for using fuzzyShow display).

Index: src/hg/inc/bamFile.h
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/inc/bamFile.h,v
retrieving revision 1.4
retrieving revision 1.5
diff -b -B -U 4 -r1.4 -r1.5
--- src/hg/inc/bamFile.h	11 Aug 2009 00:17:23 -0000	1.4
+++ src/hg/inc/bamFile.h	21 Aug 2009 05:22:01 -0000	1.5
@@ -43,5 +43,8 @@
 int bamGetTargetLength(const bam1_t *bam);
 /* Tally up the alignment's length on the reference sequence from
  * bam's packed-int CIGAR representation. */
 
+struct ffAli *bamToFfAli(const bam1_t *bam, struct dnaSeq *target, int targetOffset);
+/* Convert from bam to ffAli format. */
+
 #endif//ndef BAMFILE_H