src/hg/inc/bamFile.h 1.6

1.6 2009/08/21 22:52:35 angie
Added bamClone. Fixed bamToFfAli to walk through CIGAR operations backwards when strand is -.

Index: src/hg/inc/bamFile.h
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/inc/bamFile.h,v
retrieving revision 1.5
retrieving revision 1.6
diff -b -B -U 4 -r1.5 -r1.6
--- src/hg/inc/bamFile.h	21 Aug 2009 05:22:01 -0000	1.5
+++ src/hg/inc/bamFile.h	21 Aug 2009 22:52:35 -0000	1.6
@@ -46,5 +46,8 @@
 
 struct ffAli *bamToFfAli(const bam1_t *bam, struct dnaSeq *target, int targetOffset);
 /* Convert from bam to ffAli format. */
 
+bam1_t *bamClone(const bam1_t *bam);
+/* Return a newly allocated copy of bam. */
+
 #endif//ndef BAMFILE_H