src/hg/makeDb/doc/panTro2.txt 1.16
1.16 2009/08/21 06:25:21 markd
re-annotate/reload unrelease maf to fix bug
Index: src/hg/makeDb/doc/panTro2.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/panTro2.txt,v
retrieving revision 1.15
retrieving revision 1.16
diff -b -B -U 4 -r1.15 -r1.16
--- src/hg/makeDb/doc/panTro2.txt 21 Jul 2009 21:01:45 -0000 1.15
+++ src/hg/makeDb/doc/panTro2.txt 21 Aug 2009 06:25:21 -0000 1.16
@@ -2658,8 +2658,33 @@
# generate .gif of tree
phyloGif
+----------------------------------------------------------------------------
+2009-08-20 markd with guidance from braney
+ ###
+ # mafs not correctly displayed due to incorrectly using -sizes=sizes
+ # with mafAddIRows
+ ###
+
+ # annotate mafs
+ ssh kolossus
+ cd /cluster/data/panTro2/bed/multiz8way/anno
+ rm -f maf/*.maf run/*.maf
+ cd run
+ # edit jobs.csh to remove -sizes=sizes
+
+ csh jobs.csh >& jobs.log &
+
+>>>>>>>>>>>>>>>>>
+
+ # Load into database
+ ssh hgwdev
+ cd /cluster/data/panTro2/bed/multiz8way/anno/maf
+ mkdir -p /gbdb/panTro2/multiz8way/anno/maf
+ csh loadMaf.csh >& loadMaf.log &
+
+
#############################################################################
# PHASTCONS CONSERVATION (2006-07-18 kate)
# create cluster-friendly copies of chrom fasta files