src/hg/protein/spDbAddVarSplice/spDbAddVarSplice.c 1.5

Index: src/hg/protein/spDbAddVarSplice/spDbAddVarSplice.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/protein/spDbAddVarSplice/spDbAddVarSplice.c,v
retrieving revision 1.4
retrieving revision 1.5
diff -b -B -U 4 -r1.4 -r1.5
--- src/hg/protein/spDbAddVarSplice/spDbAddVarSplice.c	17 Mar 2007 18:12:41 -0000	1.4
+++ src/hg/protein/spDbAddVarSplice/spDbAddVarSplice.c	23 Aug 2009 19:51:26 -0000	1.5
@@ -59,12 +59,14 @@
 ZeroVar(&seq);
 while (faPepSpeedReadNext(lf, &seq.dna, &seq.size, &seq.name))
     {
     char *row[4];
-    int rowSize = chopString(seq.name, "-|", row, ArraySize(row));
+    char *name = seq.name;
+    if (startsWith("sp|", name))	// Skip over sp| introduced Aug 2009
+        name += 3;
+    int rowSize = chopString(name, "-|", row, ArraySize(row));
     if (rowSize != 3)
-        errAbort("Expecting name to be in format accession-N|DISP_ID, got %s\n", seq.name);
-    chopString(seq.name, "-|", row, ArraySize(row));
+        errAbort("Expecting name to be in format accession-N|DISP_ID, got %s\n", name);
     char *acc = row[0];
     char *version = row[1];
     char *displayId = row[2];
     int accLen = strlen(acc);