baertsch: changes by file

branch to review (2009-08-18 to 2009-08-25) v213

• src/hg/pslCDnaGenomeMatch/pslCDnaGenomeMatch.c
  • 1.26 lines changed: 1, context: html, text, full: html, text
    remove commented code
  • 1.25 lines changed: 1, context: html, text, full: html, text
    bug in filtering alignments
  • 1.24 lines changed: 3, context: html, text, full: html, text
    fix counter
  • 1.23 lines changed: 46, context: html, text, full: html, text
    fix bug with non pass thru mode. alignments are now removed if there are multiple hits that are less than minDiff cutoff. removed commented code and tweaked logging messages.