kent: changes by file

review to branch (2009-09-09 to 2009-09-15) v215

• src/hg/logCrawl/accessLogFilter/accessLogFilter.c
  • 1.1 lines changed: 74, context: html, text, full: html, text
    Seems to work. You need to edit source code to change filter parameters though.
• src/hg/logCrawl/accessLogFilter/makefile
  • 1.1 lines changed: 18, context: html, text, full: html, text
    Seems to work. You need to edit source code to change filter parameters though.
• src/hg/oneShot/freen/freen.c
  • 1.89 lines changed: 1, context: html, text, full: html, text
    Seeing if preinitializing things to zero gets rid of an off-by-one problem.
• src/inc/apacheLog.h
  • 1.4 lines changed: 7, context: html, text, full: html, text
    Adding functions involving timestamps to apacheLog.
• src/inc/common.mk
  • 1.70 lines changed: 1, context: html, text, full: html, text
    Backing out a change I didn't mean to commit.
  • 1.69 lines changed: 1, context: html, text, full: html, text
    Adding functions involving timestamps to apacheLog.
• src/lib/apacheLog.c
  • 1.5 lines changed: 29, context: html, text, full: html, text
    Checking end coordinate for off-chromosome.
• src/lib/bbiWrite.c
  • 1.6 lines changed: 2, context: html, text, full: html, text
    Checking end coordinate for off-chromosome.
• src/utils/bedClip/bedClip.c
  • 1.1 lines changed: 85, context: html, text, full: html, text
    The bedClip utility seems to work.
• src/utils/bedClip/makefile
  • 1.1 lines changed: 18, context: html, text, full: html, text
    The bedClip utility seems to work.
• src/utils/bedGraphToBigWig/bedGraphToBigWig.c
  • 1.15 lines changed: 6, context: html, text, full: html, text
    Removing nonfunctional clip option.
• src/utils/bedToBigBed/bedToBigBed.c
  • 1.9 lines changed: 5, context: html, text, full: html, text
    Removing nonfunctional clip option.