src/utils/qa/checkSync.csh 1.18

1.18 2009/09/10 22:27:24 kuhn
put GENBANK variable in central place, to simplify finding the genbank tablelist. changed checkSync.csh to use it

Index: src/utils/qa/checkSync.csh
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/qa/checkSync.csh,v
retrieving revision 1.17
retrieving revision 1.18
diff -b -B -U 4 -r1.17 -r1.18
--- src/utils/qa/checkSync.csh	14 May 2009 22:07:33 -0000	1.17
+++ src/utils/qa/checkSync.csh	10 Sep 2009 22:27:24 -0000	1.18
@@ -74,10 +74,10 @@
   endif
 endif
 
 # get tablenames for stripping out genbank
-cat /cluster/data/genbank/etc/genbank.tbls | sed -e 's/^^//; s/.$//' \
-  > genbank.local
+rm -f genbank.local
+cat $GENBANK | sed -e 's/^^//; s/.$//' > genbank.local
 echo gbLoaded >> genbank.local
 
 # 
 set active=`hgsql -h $sqlbeta -Ne "SELECT name FROM dbDb where active = 1" hgcentralbeta \