src/hg/encode/encodeLoad/doEncodeLoad.pl 1.70
1.70 2009/09/03 22:51:06 braney
ln to right place with bigBed files
Index: src/hg/encode/encodeLoad/doEncodeLoad.pl
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/encode/encodeLoad/doEncodeLoad.pl,v
retrieving revision 1.69
retrieving revision 1.70
diff -b -B -U 4 -r1.69 -r1.70
--- src/hg/encode/encodeLoad/doEncodeLoad.pl 22 Jul 2009 22:34:59 -0000 1.69
+++ src/hg/encode/encodeLoad/doEncodeLoad.pl 3 Sep 2009 22:51:06 -0000 1.70
@@ -261,9 +261,9 @@
} else {
print "$fileList created as bigBed ${tableName}.bb\n";
}
# symlink bigBed binary file into gbdb bbi directory
- @cmds = ( "ln -sf ${tableName}.bb /gbdb/${assembly}/bbi/");
+ @cmds = ( "ln -sf ${submitPath}/${tableName}.bb /gbdb/${assembly}/bbi/");
HgAutomate::verbose(2, "loadBigBed cmds [".join(" ; ",@cmds)."]\n");
$safe = SafePipe->new(CMDS => \@cmds, STDOUT => "/dev/null", DEBUG => $opt_verbose > 2);
if(my $err = $safe->exec()) {
die("ERROR: File(s) '$fileList' failed symbolic link to gbdb bigBed directory:\n" . $safe->stderr() . "\n");