src/hg/instinct/bioInt2/makeClusterFiles.c 1.3

Index: src/hg/instinct/bioInt2/makeClusterFiles.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/instinct/bioInt2/makeClusterFiles.c,v
retrieving revision 1.2
retrieving revision 1.3
diff -b -B -U 4 -r1.2 -r1.3
--- src/hg/instinct/bioInt2/makeClusterFiles.c	1 Sep 2009 05:18:02 -0000	1.2
+++ src/hg/instinct/bioInt2/makeClusterFiles.c	5 Sep 2009 01:12:01 -0000	1.3
@@ -929,10 +929,13 @@
 char *cohort_name = getCohortName(biConn, cohort_id);
 struct slName *tableNames = getCohortTables(biConn, cohort_id);
 
 uglyTime(NULL);
-struct slPair *spPathways = getPathwaysByName(biConn, pathway);
-//struct slPair *spPathways = getPathwaysByName(biConn, NULL);
+struct slPair *spPathways;
+if(sameWord(pathway,"all"))
+	spPathways = getPathwaysByName(biConn, NULL);
+else
+	spPathways = getPathwaysByName(biConn, pathway);
 uglyTime("got pathways");
 
 if (slCount(spPathways) == 0)
     errAbort("No pathways by name of %s", pathway);