src/hg/makeDb/doc/canFam2.txt 1.23

Index: src/hg/makeDb/doc/canFam2.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/canFam2.txt,v
retrieving revision 1.22
retrieving revision 1.23
diff -b -B -U 4 -r1.22 -r1.23
--- src/hg/makeDb/doc/canFam2.txt	10 Aug 2009 16:38:13 -0000	1.22
+++ src/hg/makeDb/doc/canFam2.txt	9 Sep 2009 01:46:17 -0000	1.23
@@ -2953,4 +2953,15 @@
 # 29234486 bases of 2384996543 (1.226%) in intersection
 
 # DO BLASTZ SWAP TO CREATE CANFAM2 CHAINS, NETS, AXNET, MAFNET AND
 # ALIGNMENT DOWNLOADS ON DANRER5 - documented in danRer5.txt
+
+##########################################################
+# monDom5 chain table unsplit (2009-09-08 Andy)
+
+ssh hgwdev
+cd /hive/data/genomes/canFam2/bed/blastz.monDom5.swap/axtChain
+hgLoadChain -tIndex canFam2 chainMonDom5 canFam2.monDom5.all.chain.gz 
+netFilter -minGap=10 canFam2.monDom5.net.gz | hgLoadNet -verbose=0 canFam2 netMonDom5 stdin
+echo "show tables like 'chr%chainMonDom5%'" | hgsql canFam2 | tail -n +2 \
+  | while read -a line; do echo drop table $line | hgsql canFam2; done
+