src/inc/dnaMotif.h 1.4

Index: src/inc/dnaMotif.h
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/inc/dnaMotif.h,v
retrieving revision 1.3
retrieving revision 1.4
diff -b -B -U 4 -r1.3 -r1.4
--- src/inc/dnaMotif.h	14 Sep 2006 20:45:36 -0000	1.3
+++ src/inc/dnaMotif.h	7 Sep 2009 23:40:21 -0000	1.4
@@ -74,8 +74,16 @@
 
 void dnaMotifPrintProb(struct dnaMotif *motif, FILE *f);
 /* Print DNA motif probabilities. */
 
+void dnaMotifToLogoPs2(struct dnaMotif *motif, double widthPerBase, double height, 
+                       double minHeight, char *fileName);
+/* Write logo corresponding to motif to postScript file, with extended options. minHeight
+ * is the minimum height that is excluded from information content scaling.  This allows
+ * something to show up in columns with very little information content.  Setting this
+ * to be the same as height creates an frequency-based logo.
+ */
+
 void dnaMotifToLogoPs(struct dnaMotif *motif, double widthPerBase, double height, 
 	char *fileName);
 /* Write logo corresponding to motif to postScript file. */