src/utils/bigWigSummary/bigWigSummary.c 1.11

Index: src/utils/bigWigSummary/bigWigSummary.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/bigWigSummary/bigWigSummary.c,v
retrieving revision 1.10
retrieving revision 1.11
diff -b -B -U 4 -r1.10 -r1.11
--- src/utils/bigWigSummary/bigWigSummary.c	9 Jun 2009 17:42:33 -0000	1.10
+++ src/utils/bigWigSummary/bigWigSummary.c	8 Sep 2009 19:50:24 -0000	1.11
@@ -3,8 +3,9 @@
 #include "linefile.h"
 #include "hash.h"
 #include "options.h"
 #include "sqlNum.h"
+#include "udc.h"
 #include "bigWig.h"
 
 static char const rcsid[] = "$Id$";
 
@@ -25,13 +26,15 @@
   "         mean - average value in region (default)\n"
   "         min - minimum value in region\n"
   "         max - maximum value in region\n"
   "         coverage - %% of region that is covered\n"
+  "   -udcDir=/dir/to/cache - place to put cache for remote bigBed/bigWigs\n"
   );
 }
 
 static struct optionSpec options[] = {
    {"type", OPTION_STRING},
+   {"udcDir", OPTION_STRING},
    {NULL, 0},
 };
 
 void bigWigSummary(char *bigWigFile, char *chrom, int start, int end, int dataPoints)
@@ -71,7 +74,8 @@
 optionInit(&argc, argv, options);
 if (argc != 6)
     usage();
 summaryType = optionVal("type", summaryType);
+udcSetDefaultDir(optionVal("udcDir", udcDefaultDir()));
 bigWigSummary(argv[1], argv[2], sqlUnsigned(argv[3]), sqlUnsigned(argv[4]), sqlUnsigned(argv[5]));
 return 0;
 }