src/hg/encode/DAFs/GisDnaPet.daf 1.4

Index: src/hg/encode/DAFs/GisDnaPet.daf
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/encode/DAFs/GisDnaPet.daf,v
retrieving revision 1.3
retrieving revision 1.4
diff -b -B -U 1000000 -r1.3 -r1.4
--- src/hg/encode/DAFs/GisDnaPet.daf	10 Feb 2009 17:18:38 -0000	1.3
+++ src/hg/encode/DAFs/GisDnaPet.daf	3 Sep 2009 19:13:49 -0000	1.4
@@ -1,73 +1,74 @@
 # Data Agreement File for Genomic DNA PET Ditag project $Revision$
 
 # This file specifies the data agreement between your lab and 
 # the DCC.  It should not be changed unilaterally.
 
 # Lab and general info
 grant             Gingeras
 lab               Gis
 dataType          DnaPet
 variables         cell, fragSize
 assembly          hg18
-dafVersion        0.2.2
+dafVersion        0.2.3
+validationSettings validateFiles.pairedTagAlign:mmCheckOneInN=100,mismatches=3,mmPerPair
 
 # Track/view definition
 view             Tags
 longLabelPrefix  GIS DNA PET Tags
 type             gappedPeak
 hasReplicates    no
 required         no
 
 view             RawSignal
 longLabelPrefix  GIS DNA PET Raw Signal
 type             wig
 hasReplicates    no
 required         no
 
 view             Alignments
 longLabelPrefix  GIS DNA PET Alignments
 type             pairedTagAlign
 hasReplicates    no
 required         yes
 
 # Discordant alignments have pairs on opposite strands of the same chrom, or on different chroms.
 # File formats:- 
 #  - a bed 6 file for the chrom/start/end/name/score/strand for the left & right tags
 #  - a pairedInteraction file for the relationship between left & right tags
 # Note:-
 # We cant capture the sequence of the tag in this format because we need unique names in the name column
 # to specify the relationship between the left & right tags in the pairedInteraction file.
 
 view             DiscordAlign
 longLabelPrefix  GIS DNA PET Discordant Tag Alignments
 type             bed
 hasReplicates    no
 required         no
 
 view             DiscordRel
 longLabelPrefix  GIS DNA PET Discordant Tag Relations
 type             pairedInteraction
 hasReplicates    no
 required         no
 
 # Send the raw seq reads data in either Solexa (fastq) or SOLiD (csfasta+csqual) formats:-
 # Ideally we would be able to check that the data contains either fastq or csfasta+csqual formats
 #   but the DAF control 'required=yes/no' is to simple to specify that.
 
 # Solexa:-
 view             RawData
 type             fastq
 hasReplicates    no
 required         no
 
 # SOLiD:-
 view             RawData2
 type             csfasta
 required         no
 hasReplicates    no
 
 view             RawData3
 type             csqual
 required         no
 hasReplicates    no