src/utils/bigWigInfo/bigWigInfo.c 1.2
1.2 2009/09/08 19:50:24 kent
Adding udcDir to the command line as an option.
Index: src/utils/bigWigInfo/bigWigInfo.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/bigWigInfo/bigWigInfo.c,v
retrieving revision 1.1
retrieving revision 1.2
diff -b -B -U 1000000 -r1.1 -r1.2
--- src/utils/bigWigInfo/bigWigInfo.c 29 Jun 2009 17:50:50 -0000 1.1
+++ src/utils/bigWigInfo/bigWigInfo.c 8 Sep 2009 19:50:24 -0000 1.2
@@ -1,52 +1,55 @@
/* bigWigInfo - Print out information about bigWig file.. */
#include "common.h"
#include "linefile.h"
#include "hash.h"
#include "options.h"
#include "localmem.h"
+#include "udc.h"
#include "bigWig.h"
static char const rcsid[] = "$Id$";
void usage()
/* Explain usage and exit. */
{
errAbort(
"bigWigInfo - Print out information about bigWig file.\n"
"usage:\n"
" bigWigInfo file.bw\n"
"options:\n"
- " -xxx=XXX\n"
+ " -udcDir=/dir/to/cache - place to put cache for remote bigBed/bigWigs\n"
);
}
static struct optionSpec options[] = {
+ {"udcDir", OPTION_STRING},
{NULL, 0},
};
void bigWigInfo(char *fileName)
/* bigWigInfo - Print out information about bigWig file.. */
{
struct bbiFile *bwf = bigWigFileOpen(fileName);
printf("version: %d\n", bwf->version);
printf("isSwapped: %d\n", bwf->isSwapped);
printf("zoomLevels: %d\n", bwf->zoomLevels);
struct bbiZoomLevel *zoom;
for (zoom = bwf->levelList; zoom != NULL; zoom = zoom->next)
printf("\t%d\n", zoom->reductionLevel);
struct bbiChromInfo *chrom, *chromList = bbiChromList(bwf);
printf("chromCount: %d\n", slCount(chromList));
for (chrom=chromList; chrom != NULL; chrom = chrom->next)
printf("\t%s %d %d\n", chrom->name, chrom->id, chrom->size);
}
int main(int argc, char *argv[])
/* Process command line. */
{
optionInit(&argc, argv, options);
+udcSetDefaultDir(optionVal("udcDir", udcDefaultDir()));
if (argc != 2)
usage();
bigWigInfo(argv[1]);
return 0;
}