angie: changes by commit

branch to review (2009-09-02 to 2009-09-09) v214

• Added snp130CodingDbSnp (used dbSNP's provisional SNP coord mapping from hg18).
  • src/hg/makeDb/doc/hg19.txt 1.37 - lines changed: 54, context: html, text, full: html, text
• Added bam to packableType().
  • src/hg/lib/trackDbCustom.c 1.70 - lines changed: 2, context: html, text, full: html, text
• Basic ui for type bam -- still need to add filtering on BAM flag bits.
  • src/hg/hgTrackUi/hgTrackUi.c 1.500 - lines changed: 30, context: html, text, full: html, text
• Add to L instead of overwriting -- need common.mk's handling of USE_SSL.
  • src/hg/encode/validateFiles/makefile 1.3 - lines changed: 1, context: html, text, full: html, text
• Swapped order of outputs to reflect mysql 5 index-order vs. mysql 4 table-order.
  • src/hg/hgGetAnn/tests/expected/chrRangeGenePred.gp 1.3 - lines changed: 2, context: html, text, full: html, text
  • src/hg/hgGetAnn/tests/expected/chrRangeGenePredColHeaders.gp 1.3 - lines changed: 2, context: html, text, full: html, text
  • src/hg/hgGetAnn/tests/expected/chrRangeGenePredTsvHeaders.gp 1.3 - lines changed: 2, context: html, text, full: html, text
• Added basic filtering on hgTrackUi settings. Make paired-but-not-properly items a lighter shade.
  • src/hg/hgTracks/bamTrack.c 1.8 - lines changed: 43, context: html, text, full: html, text