braney: changes by file

branch to review (2009-09-02 to 2009-09-09) v214

• src/hg/makefile
  • 1.153 lines changed: 1, context: html, text, full: html, text
    add encode/validateFiles to utils. THis probably should be part of something ENCODE specific (or maybe not).
• src/hg/encode/DAFs/GisDnaPet.daf
  • 1.4 lines changed: 2, context: html, text, full: html, text
    add validateFiles command line
• src/hg/encode/encodeLoad/doEncodeLoad.pl
  • 1.70 lines changed: 1, context: html, text, full: html, text
    ln to right place with bigBed files
• src/hg/hgTracks/wigCommon.h
  • 1.7 lines changed: 2, context: html, text, full: html, text
    always include 0 logic
• src/hg/hgTracks/wigTrack.c
  • 1.92 lines changed: 10, context: html, text, full: html, text
    always include 0 logic
• src/hg/inc/hui.h
  • 1.137 lines changed: 9, context: html, text, full: html, text
    add is alwaysZero
• src/hg/inc/wiggle.h
  • 1.86 lines changed: 7, context: html, text, full: html, text
    add is alwaysZero
• src/hg/lib/hui.c
  • 1.235 lines changed: 19, context: html, text, full: html, text
    always include 0 option
• src/hg/lib/wiggleCart.c
  • 1.21 lines changed: 21, context: html, text, full: html, text
    always include 0 option
• src/hg/lib/wiggleUtils.c
  • 1.55 lines changed: 3, context: html, text, full: html, text
    if there's no wiggle on a chrom, just assume minSpan is 1 since we won't end up using this value anyway. TIME TO GET RID OF THESE WIGGLES!!
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.513 lines changed: 2, context: html, text, full: html, text
    get the right kind of bed in there
  • 1.507 lines changed: 26, context: html, text, full: html, text
    wgEncodeGisRnaSeqAlignmentsK562Cytosol
  • 1.506 lines changed: 1, context: html, text, full: html, text
    fixed bug where replicate 2 was labeled as replicate 1