hartera: changes by file

branch to review (2009-09-02 to 2009-09-09) v214

• src/hg/hgc/hgc.c
  • 1.1570 lines changed: 7, context: html, text, full: html, text
    Changed code for Ensembl and Vega message given on details page if there is no protein prediction available.
• src/hg/makeDb/doc/hg18.txt
  • 1.381 lines changed: 47, context: html, text, full: html, text
    Documented code changes and reloaded vegaPep table with only those proteins whose transcripts are in vegaGtp.
  • 1.380 lines changed: 16, context: html, text, full: html, text
    Documented reloading tables after reversion to older data during mySQL upgrade.
  • 1.379 lines changed: 20, context: html, text, full: html, text
    Added a vegaPep table for the Vega Genes update.
• src/hg/makeDb/doc/mm9.txt
  • 1.110 lines changed: 46, context: html, text, full: html, text
    Documented code changes and reloaded vegaPep table with only those proteins whose transcripts are in vegaGtp.
  • 1.109 lines changed: 19, context: html, text, full: html, text
    Documented creation of vega35 directory. Documented reloading tables after some of them reverted to older versions during mySQL upgrade.
  • 1.108 lines changed: 23, context: html, text, full: html, text
    Added a vegaPep table for the Vega Genes update.
• src/hg/makeDb/trackDb/human/hg18/trackDb.ra
  • 1.416 lines changed: 1, context: html, text, full: html, text
    Changed colour for vega genes to distinguish them more clearly from the pseudogenes subtrack.
• src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra
  • 1.57 lines changed: 1, context: html, text, full: html, text
    Changed colour for vega genes to distinguish them more clearly from the pseudogenes subtrack.
  • 1.56 lines changed: 1, context: html, text, full: html, text
    Added vegaPep table to vegaGeneComposite track entry.