src/hg/inc/cddInfo.h 1.1

Index: src/hg/inc/cddInfo.h
===================================================================
RCS file: src/hg/inc/cddInfo.h
diff -N src/hg/inc/cddInfo.h
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ src/hg/inc/cddInfo.h	2 Sep 2009 23:56:16 -0000	1.1
@@ -0,0 +1,71 @@
+/* cddInfo.h was originally generated by the autoSql program, which also 
+ * generated cddInfo.c and cddInfo.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef CDDINFO_H
+#define CDDINFO_H
+
+#define CDDINFO_NUM_COLS 11
+
+struct cddInfo
+/* Conserved Domain Description */
+    {
+    struct cddInfo *next;  /* Next in singly linked list. */
+    char *chrom;	/* chromosome */
+    unsigned chromStart;	/* Start position in chromosome */
+    unsigned chromEnd;	/* End position in chromosome */
+    char *name;	/* hit name */
+    unsigned score;	/* Score from 900-1000.  1000 is best */
+    char strand[2];	/* Value should be + or - */
+    char *fullname;	/* standard name */
+    char *NCBInum;	/* NCBI Identifier */
+    double evalue;	/* Expect value */
+    unsigned percentlength;	/* Data source */
+    unsigned percentident;	/* Data source */
+    };
+
+void cddInfoStaticLoad(char **row, struct cddInfo *ret);
+/* Load a row from cddInfo table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+
+struct cddInfo *cddInfoLoad(char **row);
+/* Load a cddInfo from row fetched with select * from cddInfo
+ * from database.  Dispose of this with cddInfoFree(). */
+
+struct cddInfo *cddInfoLoadAll(char *fileName);
+/* Load all cddInfo from whitespace-separated file.
+ * Dispose of this with cddInfoFreeList(). */
+
+struct cddInfo *cddInfoLoadAllByChar(char *fileName, char chopper);
+/* Load all cddInfo from chopper separated file.
+ * Dispose of this with cddInfoFreeList(). */
+
+#define cddInfoLoadAllByTab(a) cddInfoLoadAllByChar(a, '\t');
+/* Load all cddInfo from tab separated file.
+ * Dispose of this with cddInfoFreeList(). */
+
+struct cddInfo *cddInfoCommaIn(char **pS, struct cddInfo *ret);
+/* Create a cddInfo out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new cddInfo */
+
+void cddInfoFree(struct cddInfo **pEl);
+/* Free a single dynamically allocated cddInfo such as created
+ * with cddInfoLoad(). */
+
+void cddInfoFreeList(struct cddInfo **pList);
+/* Free a list of dynamically allocated cddInfo's */
+
+void cddInfoOutput(struct cddInfo *el, FILE *f, char sep, char lastSep);
+/* Print out cddInfo.  Separate fields with sep. Follow last field with lastSep. */
+
+#define cddInfoTabOut(el,f) cddInfoOutput(el,f,'\t','\n');
+/* Print out cddInfo as a line in a tab-separated file. */
+
+#define cddInfoCommaOut(el,f) cddInfoOutput(el,f,',',',');
+/* Print out cddInfo as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+#endif /* CDDINFO_H */
+